Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_A20
         (919 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1008 - 7987936-7988628,7988923-7989102                           33   0.32 
06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968...    30   3.0  
09_06_0186 + 21427739-21428813,21428894-21428977,21429136-21429254     29   3.9  
12_01_0477 + 3742751-3745200,3747192-3747502,3747886-3748232           29   5.2  
06_03_1508 - 30653967-30654245,30654342-30654631,30654773-306548...    28   9.0  

>01_01_1008 - 7987936-7988628,7988923-7989102
          Length = 290

 Score = 33.1 bits (72), Expect = 0.32
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -2

Query: 414 RKRHASRREKGGQVSGKRQGRKQESARGSFQGETPG 307
           R R   RR  GG+V+G+   R +   RG+++GE  G
Sbjct: 239 RVRRRGRRGGGGEVNGEEAARSRRRRRGAWEGEEEG 274


>06_03_0833 -
           25196091-25196372,25196464-25196565,25196640-25196838,
           25196978-25197278,25197471-25197645,25197842-25198012,
           25198207-25198239
          Length = 420

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
 Frame = +1

Query: 211 CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLF-PTL-PLTGYLSA 384
           CWR  +        T  D Q    +    +KD    P + PSC L+F P L PL   L A
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQPLHYSLYA 342

Query: 385 F 387
           F
Sbjct: 343 F 343


>09_06_0186 + 21427739-21428813,21428894-21428977,21429136-21429254
          Length = 425

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -1

Query: 751 PAVXV-AGSRATNSFSEGNWLQQSADTKYCSSSVAVVRPPLQELCSTAYIPRSA 593
           P++ V A     N  S  +  Q S   K   SSVA   PP + L ST  +PR++
Sbjct: 155 PSIIVTANPPPRNVVSTTSVPQNSIAAKLACSSVAAASPPPRNLVSTTPVPRNS 208


>12_01_0477 + 3742751-3745200,3747192-3747502,3747886-3748232
          Length = 1035

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 34/115 (29%), Positives = 44/115 (38%), Gaps = 10/115 (8%)
 Frame = +3

Query: 225 HRLRPPDEHH----KNRRSSQRWRNPTGL*RYQAFPPGSSLVRSPVSDPAAYRIPVR--- 383
           HR R  D H     + R    R R+P    R ++ PP     R     P  Y +P     
Sbjct: 153 HRDRDRDRHAAGRPRGRGDDDRDRDPP---RGRSPPPYRGDDRGRYDGPPDYMLPDHPSS 209

Query: 384 LSPFGKRGAF---S*LTL*VSQFGVGRSLQAGLCARTPRFSPTAAPYPVTIVLSP 539
           L P  K G F     +TL V    +GR+    L  R+P   P   P PV +   P
Sbjct: 210 LRPARKDGEFFGEPGMTLRVCSTEMGRTSSLYLDRRSPPLPPRPPPPPVRVASPP 264


>06_03_1508 -
           30653967-30654245,30654342-30654631,30654773-30654841,
           30654854-30654921,30655016-30655492,30655578-30655874,
           30655974-30656824,30656917-30656990,30657270-30657292,
           30657709-30657772,30658098-30658370,30658511-30658587,
           30658686-30658912
          Length = 1022

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +2

Query: 254 QKSTLKSEVAKPDRTIKIPGV-SPWKLPRALSCFRPCRLPDTCPPFSLRE 400
           Q   L+  V  P RT+   G  + +  P  L+C  PC L   CP  +L +
Sbjct: 158 QNINLQDAVNFPSRTLDCRGCCAGFFCPHGLTCMIPCPLGAYCPESTLNK 207


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,294,873
Number of Sequences: 37544
Number of extensions: 568347
Number of successful extensions: 1760
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1759
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2612387020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)