Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_A20
         (919 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48615-1|CAA88531.1|  953|Homo sapiens serine/threonine kinase w...    35   0.36 
X90846-1|CAA62351.1|  954|Homo sapiens mixed lineage kinase 2 pr...    35   0.36 
AL359392-1|CAI40208.2| 1055|Homo sapiens LIM domain 7 protein.         31   5.9  
AL137782-2|CAI40006.2| 1055|Homo sapiens LIM domain 7 protein.         31   5.9  
AL137121-1|CAI39479.2| 1055|Homo sapiens LIM domain 7 protein.         31   5.9  
AK131464-1|BAD18609.1|  378|Homo sapiens protein ( Homo sapiens ...    31   5.9  
AF174600-1|AAF04521.1|  255|Homo sapiens F-box protein Fbx20 pro...    31   5.9  

>Z48615-1|CAA88531.1|  953|Homo sapiens serine/threonine kinase with
           SH3 domain, leucine zipper domain and proline rich
           protein.
          Length = 953

 Score = 35.1 bits (77), Expect = 0.36
 Identities = 19/65 (29%), Positives = 33/65 (50%)
 Frame = -2

Query: 378 QVSGKRQGRKQESARGSFQGETPGIFIVLSGFATSDLSVDFCDARQGGGAYGKTPATRPF 199
           ++ G  +G KQ S+     G++P    +  GFA+ +   +F +A  GG +   +P + P 
Sbjct: 574 RLKGLGEGSKQWSSSAPNLGKSPKHTPIAPGFASLNEMEEFAEAEDGGSSVPPSPYSTPS 633

Query: 198 YGSWP 184
           Y S P
Sbjct: 634 YLSVP 638


>X90846-1|CAA62351.1|  954|Homo sapiens mixed lineage kinase 2
           protein.
          Length = 954

 Score = 35.1 bits (77), Expect = 0.36
 Identities = 19/65 (29%), Positives = 33/65 (50%)
 Frame = -2

Query: 378 QVSGKRQGRKQESARGSFQGETPGIFIVLSGFATSDLSVDFCDARQGGGAYGKTPATRPF 199
           ++ G  +G KQ S+     G++P    +  GFA+ +   +F +A  GG +   +P + P 
Sbjct: 575 RLKGLGEGSKQWSSSAPNLGKSPKHTPIAPGFASLNEMEEFAEAEDGGSSVPPSPYSTPS 634

Query: 198 YGSWP 184
           Y S P
Sbjct: 635 YLSVP 639


>AL359392-1|CAI40208.2| 1055|Homo sapiens LIM domain 7 protein.
          Length = 1055

 Score = 31.1 bits (67), Expect = 5.9
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +2

Query: 287 PDRTIKIPGVSPWKLPRALSCFRPCRLPDTCPPFSLREAWRFLI 418
           PDR   +P   PW LP  +     C L  TCP      + R L+
Sbjct: 210 PDRYHPVPFPEPWTLPPEIQAKFLCVLERTCPSKEKSNSCRILV 253


>AL137782-2|CAI40006.2| 1055|Homo sapiens LIM domain 7 protein.
          Length = 1055

 Score = 31.1 bits (67), Expect = 5.9
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +2

Query: 287 PDRTIKIPGVSPWKLPRALSCFRPCRLPDTCPPFSLREAWRFLI 418
           PDR   +P   PW LP  +     C L  TCP      + R L+
Sbjct: 210 PDRYHPVPFPEPWTLPPEIQAKFLCVLERTCPSKEKSNSCRILV 253


>AL137121-1|CAI39479.2| 1055|Homo sapiens LIM domain 7 protein.
          Length = 1055

 Score = 31.1 bits (67), Expect = 5.9
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +2

Query: 287 PDRTIKIPGVSPWKLPRALSCFRPCRLPDTCPPFSLREAWRFLI 418
           PDR   +P   PW LP  +     C L  TCP      + R L+
Sbjct: 210 PDRYHPVPFPEPWTLPPEIQAKFLCVLERTCPSKEKSNSCRILV 253


>AK131464-1|BAD18609.1|  378|Homo sapiens protein ( Homo sapiens
           cDNA FLJ16629 fis, clone TESTI4019657, highly  similar
           to Homo sapiens cyclin G associated kinase (GAK). ).
          Length = 378

 Score = 31.1 bits (67), Expect = 5.9
 Identities = 39/110 (35%), Positives = 48/110 (43%)
 Frame = -1

Query: 775 AANKKPPLPAVXVAGSRATNSFSEGNWLQQSADTKYCSSSVAVVRPPLQELCSTAYIPRS 596
           AA+   P PA    GS A   F  G ++ ++A T   SSS    RPP Q     A  P  
Sbjct: 225 AASAVAPTPATE--GSPA--GFPPGGFIPKTATTPKGSSSWQTSRPPAQ----GASWPPQ 276

Query: 595 ANPVTSGCCQWR*VVSYRVGLKTIVTG*GAAVGLKRGVRAHSPAWSERPT 446
           A P    C Q R   +Y      I    GA    +RGVRA  P++ E PT
Sbjct: 277 AKPPPKACTQPR--PNYASNFSVI----GARE--ERGVRA--PSFGESPT 316


>AF174600-1|AAF04521.1|  255|Homo sapiens F-box protein Fbx20
           protein.
          Length = 255

 Score = 31.1 bits (67), Expect = 5.9
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +2

Query: 287 PDRTIKIPGVSPWKLPRALSCFRPCRLPDTCPPFSLREAWRFLI 418
           PDR   +P   PW LP  +     C L  TCP      + R L+
Sbjct: 84  PDRYHPVPFPEPWTLPPEIQAKFLCVLERTCPSKEKSNSCRILV 127


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,392,026
Number of Sequences: 237096
Number of extensions: 2791065
Number of successful extensions: 10823
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10821
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11936890730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)