Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_A17
         (909 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    27   0.31 
DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2 pr...    24   1.7  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   2.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   2.2  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   3.8  
DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    23   5.1  
DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex det...    22   6.7  
DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex det...    22   6.7  
DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex det...    22   6.7  
DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex det...    22   6.7  
DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex det...    22   6.7  
DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex det...    22   6.7  
DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex det...    22   6.7  

>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 26.6 bits (56), Expect = 0.31
 Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
 Frame = +3

Query: 123 NKLKSSQRDKVKKFVAFTQTSESTAIYCLSQNDWKLDLASDNYFQNPDA-YYKDSIKTSV 299
           NK+ +S   ++++ +    T  S    C   N  K   +S N  +N  + Y++   K   
Sbjct: 9   NKILTSLT-RLRRHIQNVHTRPSKEPIC---NICKRVYSSLNSLRNHKSIYHRQHSKNEQ 64

Query: 300 DRKKLEQLFNKYRDQQE-LDKITA 368
            RK++EQ+  + R+Q+E  D++T+
Sbjct: 65  QRKEMEQMREREREQREHSDRVTS 88


>DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2
           precursor protein.
          Length = 175

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 663 WNIVLRGRFKFLDAWCKFLTEHHKR 737
           WN +LR  F  LD W + L  H K+
Sbjct: 28  WNTLLRPNF--LDGWYQTLQTHMKK 50


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = -3

Query: 571 KSFNSDSNVGNLAFNLSNPSTANSTMPIINSSLVNSHCTAAL 446
           +S  S +  GN+++  +N ++ NS + I  +SLV++    +L
Sbjct: 712 ESTQSLTTTGNVSYLTTNNTSNNSQLQIPRASLVSTTSVKSL 753


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +3

Query: 213  QNDWKLDLASDNYFQNPDAYYKDSIKTSVDRKKLEQLFNKYRDQQ 347
            QND+ +D +S + F +   Y       + D+K  E L      QQ
Sbjct: 945  QNDYIVDESSSSSFYSSFLYKSSESSCNPDQKPTEYLLEDSMKQQ 989


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 725 APQKIYTKRHMESFTRLCNTNRRWH 799
           AP ++ T+   ES   LCNT   WH
Sbjct: 453 APPQLPTE---ESVDALCNTLHHWH 474


>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 368 RRGHEILRRPKLKSRINFSFNYS 436
           RR  E  + PK+ S ++ ++NYS
Sbjct: 70  RRERERSKEPKIVSSLSNNYNYS 92


>DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 368 RRGHEILRRPKLKSRINFSFNYS 436
           RR  E  + PK+ S ++ ++NYS
Sbjct: 70  RRERERSKEPKIISSLSNNYNYS 92


>DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 368 RRGHEILRRPKLKSRINFSFNYS 436
           RR  E  + PK+ S ++ ++NYS
Sbjct: 70  RRERERSKEPKIISSLSNNYNYS 92


>DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 368 RRGHEILRRPKLKSRINFSFNYS 436
           RR  E  + PK+ S ++ ++NYS
Sbjct: 70  RRERERSKEPKIISSLSNNYNYS 92


>DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 368 RRGHEILRRPKLKSRINFSFNYS 436
           RR  E  + PK+ S ++ ++NYS
Sbjct: 70  RRERERSKEPKIISSLSNNYNYS 92


>DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 368 RRGHEILRRPKLKSRINFSFNYS 436
           RR  E  + PK+ S ++ ++NYS
Sbjct: 70  RRERERSKEPKIISSLSNNYNYS 92


>DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 368 RRGHEILRRPKLKSRINFSFNYS 436
           RR  E  + PK+ S ++ ++NYS
Sbjct: 70  RRERERSKEPKIISSLSNNYNYS 92


>DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 368 RRGHEILRRPKLKSRINFSFNYS 436
           RR  E  + PK+ S ++ ++NYS
Sbjct: 70  RRERERSKEPKIISSLSNNYNYS 92


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,470
Number of Sequences: 438
Number of extensions: 4631
Number of successful extensions: 19
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29509116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)