Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_A16
         (918 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatas...    30   0.40 
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    29   1.2  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    26   6.5  
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe...    26   8.6  

>SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatase
           Ppe1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 305

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
 Frame = +2

Query: 161 KVCTMFSDK*NLTVLF*KYGLL--GHAVYFADENILTV----KIFIKMGKLLSLLSRDES 322
           KV T FS   +LT++   + L+  G+  +FAD+N++TV        + G + S++  DES
Sbjct: 217 KVTTEFSQINDLTLIARAHQLVQEGYKYHFADKNLVTVWSAPNYCYRCGNVASVMKVDES 276

Query: 323 HCCSSPRYDIF---LDFENAAPTMTERDVY 403
                P + IF    D +   P   +R  Y
Sbjct: 277 ---LEPEFRIFSAVADEDRTVPPSRKRSEY 303


>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = -2

Query: 473 RHLYNTVSLLISSRILTGLFGHRRKHRVRSLWARHSRNPRIYHIEATSSNATRHAIKDSI 294
           + +Y T  L   S    G FGH +   +  L A   ++P I  ++ T  +A  H +KD +
Sbjct: 441 KEIYKTCFLTTES----GFFGHLKSIILSQLPAAVFKSPDIVSVKKTLEDARSHLLKDDL 496


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +1

Query: 637 GQGXPRNTLNNNXALVKXFAGNSGXPF 717
           G G   NT NNN A    F GN+   F
Sbjct: 409 GFGANNNTANNNTAPTSTFGGNNSSNF 435


>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +2

Query: 785 KRFQKGGSSIRTXPPGXGXPINRXRSPKK 871
           K+FQ GGS     P     PIN    P+K
Sbjct: 274 KQFQSGGSVATAPPAAVVEPINEMYLPQK 302


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,963,087
Number of Sequences: 5004
Number of extensions: 53480
Number of successful extensions: 114
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)