Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_A16
         (918 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23452-11|AAK31548.1|  334|Caenorhabditis elegans Hypothetical p...    41   0.001
AY204203-1|AAO39204.1|  391|Caenorhabditis elegans nuclear recep...    29   4.7  
AF016675-6|AAF02171.2|  391|Caenorhabditis elegans Nuclear hormo...    29   4.7  

>U23452-11|AAK31548.1|  334|Caenorhabditis elegans Hypothetical
           protein R07G3.8 protein.
          Length = 334

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 16/39 (41%), Positives = 27/39 (69%)
 Frame = +2

Query: 347 DIFLDFENAAPTMTERDVYDDVQRVLLESEKILEEIQCY 463
           +IF+DFENA PT  ER++Y+  + VL + + +L ++  Y
Sbjct: 32  EIFVDFENAQPTDEEREIYNMAEEVLNDCDLVLADVSSY 70


>AY204203-1|AAO39204.1|  391|Caenorhabditis elegans nuclear receptor
           NHR-115 protein.
          Length = 391

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 242 FADENILTVKIFIKMGKLLSLLSRDESHCCSSPRY 346
           F+D N+ + K FI +  L+  +SR   H C +P Y
Sbjct: 106 FSDSNVTSQKTFIDVQNLVFEVSRYLDHGCETPIY 140


>AF016675-6|AAF02171.2|  391|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 115 protein.
          Length = 391

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 242 FADENILTVKIFIKMGKLLSLLSRDESHCCSSPRY 346
           F+D N+ + K FI +  L+  +SR   H C +P Y
Sbjct: 106 FSDSNVTSQKTFIDVQNLVFEVSRYLDHGCETPIY 140


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,594,157
Number of Sequences: 27780
Number of extensions: 317650
Number of successful extensions: 660
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2349764032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)