Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_A15
         (908 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.11 |||actin binding methyltransferase |Schizosaccharomyc...    28   1.6  
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop...    28   1.6  
SPCC1183.09c |pmp31|mug75|plasma membrane proteolipid Pmp31|Schi...    27   2.8  
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S...    27   3.7  
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    26   6.4  

>SPBC3H7.11 |||actin binding methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 248

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +3

Query: 240 NNQKKLESEQWINRDFQCFFWSPEK 314
           N  +  +   W++R+F C+F  P+K
Sbjct: 30  NETRFFKDRHWLDREFDCYFGLPDK 54


>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
           pyrophosphate phosphatase fusion 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = +3

Query: 111 VDKYIIQPIHYKTNLCFDLYLGNNYSNVVLLSPYLHSLKDTTVNNQKKLES 263
           +  +++Q  +Y+T   +D YL NN     L +  LH      +   K+L++
Sbjct: 167 IQNHVVQAQYYRTEKQYDKYLENNKFLTHLNNEVLHDNYTRNIEKLKELDN 217


>SPCC1183.09c |pmp31|mug75|plasma membrane proteolipid
           Pmp31|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 105

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -2

Query: 757 SIITGSNFILIYLECNIVATIL-LCSGACSVDALSNCCIC 641
           S +T S+F+LI L   +   ++ +  G C+ D L N C+C
Sbjct: 2   SNVTLSDFLLIVLSFFVPFIVVGIRRGFCTADFLINICLC 41


>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 462

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 767 EEIVCELQAEKISPLVRHQGKLALTPQLXFQPS 865
           +  VC  +A + +PL+R +G LA   ++ F PS
Sbjct: 244 DNTVCLWKASQSTPLLRLEGHLARVGRVAFHPS 276


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 18/75 (24%), Positives = 31/75 (41%)
 Frame = +2

Query: 368 DYFREGRLKLCSKSLLFEPRDWTYPLIKLQFRDCVELCLVDSTERNNVIVVKVKQYAEML 547
           D   +  L + +K  L+EP D  Y  +      CV+     S ++ ++    +  Y    
Sbjct: 172 DSLLQNLLYMFTKKRLYEPTDMKYVEV------CVDSITSLSFDKTDMTKPNLSSYKTFF 225

Query: 548 EENILAPYKFFYEKK 592
           E N +   K FY K+
Sbjct: 226 ETNFIENTKNFYAKE 240


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,426,039
Number of Sequences: 5004
Number of extensions: 71654
Number of successful extensions: 170
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)