Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_A14
         (1007 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.78 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.4  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    27   3.2  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   7.3  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   9.7  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   9.7  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.5 bits (63), Expect = 0.78
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -2

Query: 727 PPPPPXXXXXXXXPXXXXPPPPPPXF 650
           PPPPP        P    PPPPPP +
Sbjct: 9   PPPPPPPPGFE--PPSQPPPPPPPGY 32


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -2

Query: 727 PPPPPXXXXXXXXPXXXXPPPPPP 656
           PPPPP        P    PPPPPP
Sbjct: 762 PPPPPPPGVAGAGPPP--PPPPPP 783



 Score = 27.5 bits (58), Expect = 3.2
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = -1

Query: 728 PPPPPXXXXXXXXAXXXXPPPPP 660
           PPPPP             PPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 26.2 bits (55), Expect = 7.3
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = -2

Query: 727 PPPPPXXXXXXXXPXXXXPPPPPP 656
           PPPPP        P     PPP P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAP 756



 Score = 26.2 bits (55), Expect = 7.3
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = -3

Query: 729 PPPPPXXXXXXXXXLXXXPPPPP 661
           PPPPP             PPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -2

Query: 727 PPPPPXXXXXXXXPXXXXPPPP 662
           PPPPP        P    PPPP
Sbjct: 908 PPPPPTASMTASAPAIASPPPP 929


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 12/28 (42%), Positives = 12/28 (42%), Gaps = 4/28 (14%)
 Frame = -2

Query: 727 PPPPPXXXXXXXXPXXXX----PPPPPP 656
           PPPPP        P        PPPPPP
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPP 366


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = -2

Query: 727 PPPPPXXXXXXXXPXXXXPPPPPP 656
           P  PP        P    PPPPPP
Sbjct: 221 PEIPPTYTPKQADPLPAPPPPPPP 244


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = -2

Query: 727  PPPPPXXXXXXXXPXXXXPPPPPP 656
            P PPP        P    PP PPP
Sbjct: 1190 PVPPPSEAPPVPKPSVGVPPVPPP 1213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,679,962
Number of Sequences: 5004
Number of extensions: 20090
Number of successful extensions: 106
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 523262732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)