Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_A13
         (892 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.07 |||haloacid dehalogenase-like hydrolase|Schizosaccha...    71   3e-13
SPAC4C5.01 |||haloacid dehalogenase-like hydrolase |Schizosaccha...    52   8e-08
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    31   0.22 
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    28   1.6  
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    27   2.7  
SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces ...    26   8.3  

>SPCC1020.07 |||haloacid dehalogenase-like
           hydrolase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 236

 Score = 70.5 bits (165), Expect = 3e-13
 Identities = 37/111 (33%), Positives = 64/111 (57%), Gaps = 1/111 (0%)
 Frame = +3

Query: 321 LYTVGFQKVASRYGK-KFTFELKSRIMGQQTREFAGNIIKYLDLPLTIEDFVSETRQIFE 497
           +YT     +  RY K  F+ E+K+++MG+ ++E +   + +  + LT E++++  R+   
Sbjct: 20  IYTKSTNIILKRYNKGPFSMEVKAKMMGRTSKEASRIFLDWSGIDLTCEEYIALQRETQA 79

Query: 498 ELFPQSEILPGVKKLIYHLNQHNIPMGLATSSSKESYELKTLKHQDLFDLF 650
           EL+  ++ LPGV  L+  L   NIP+ LATSS   ++E K+     LFD F
Sbjct: 80  ELWRHTKPLPGVMNLLSKLKSLNIPIALATSSDTHNFEKKSAHLSHLFDHF 130


>SPAC4C5.01 |||haloacid dehalogenase-like hydrolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 246

 Score = 52.4 bits (120), Expect = 8e-08
 Identities = 44/182 (24%), Positives = 79/182 (43%), Gaps = 11/182 (6%)
 Frame = +3

Query: 321 LYTVGFQKVASRYGKK-FTFELKSRIMGQQTREFAGNIIKYLDLPLTIEDFVSETRQIFE 497
           +YT     +  RYGK      +K+++MG+     A  +I + ++P+T + FV E + I  
Sbjct: 25  IYTKTTNLILDRYGKDPLPISVKAQMMGRPGSAAAKVVIDWSNIPMTPQQFVDEQQVIRA 84

Query: 498 ELFPQSEILPGVKKLIYHLNQHNIPMGLATSSSKESYELKTLKHQDLFDLFSHKTL---- 665
           + +   + +PG + LI +L+ H I +G+ T        +KT   + +F+ F    +    
Sbjct: 85  KFWSSLKPMPGAESLINNLSNHGIDIGVCTHPYA---IIKTAHLKHIFEKFGKNVITGDN 141

Query: 666 -GLFRSRREEXESHTXXXXXXXXXXXRXTGIXKVS-----RFEDSINGVKXXXXXGMQVV 827
             +   R +                 +  G+  ++      FEDSI GVK     GM V+
Sbjct: 142 PSIAPGRGKPFPDIWLKVLNLINESRKQRGLKALTPSQCIAFEDSIPGVKSAKAAGMHVI 201

Query: 828 MV 833
            V
Sbjct: 202 WV 203


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +3

Query: 312 LRDLYTVGFQKVASRYGKKFTFELKSRIMGQQTREFAGNIIKYLDLPLTIEDFVSE-TRQ 488
           L + YT  F+K+  +YG+ F   LK  + G+   +  G  +  + L  T E+  S  + +
Sbjct: 479 LEEQYTDFFKKLKEKYGEFFQNLLKKELTGKPESDLEGLRLVGVQLQATYENLKSNFSAR 538

Query: 489 IFEEL 503
           IF +L
Sbjct: 539 IFNQL 543


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 962

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
 Frame = +3

Query: 363  KKFTFEL-KSRIMGQQTREFAGNI-IKYLDLPLTIEDF--VSETRQIFEELFPQSEILPG 530
            KK   EL K  ++ +  R+  G I + YL+   T+ +F  +  ++ I E     ++++  
Sbjct: 845  KKSMGELYKMEMIHECPRQLFGQILVVYLNRERTLLNFYLIENSKTIDEATLQLTDLIQA 904

Query: 531  VKKLIYHLNQHNIP 572
            +K  IY+L   N+P
Sbjct: 905  IKTGIYYLRMFNLP 918


>SPCC132.01c ||SPCC1322.17c|DUF814 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1021

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -1

Query: 733 IGGYG*YIGVWLSXSSRLDLKSPKV-LCENKSNKS*CLSVFNSYDSLLLLVAKP 575
           +G YG  +       S+LD   P   LC +++ K+  L+ F   DS+L  V KP
Sbjct: 231 LGEYGNALIEHCLRRSKLDPLFPACQLCADETKKNDLLAAFQEADSILAAVNKP 284


>SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 500

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 9/31 (29%), Positives = 21/31 (67%)
 Frame = +2

Query: 203 TQVYWYFSYFIKIFENMTTFKPVTHVLFDMD 295
           ++ +W  ++ +K+F + T F P++ +L DM+
Sbjct: 290 SESFWIMAHCLKMFYDETEFLPLSGLLPDMN 320


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,260,692
Number of Sequences: 5004
Number of extensions: 67401
Number of successful extensions: 181
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)