Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_A13
         (892 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0890 - 8761787-8761910,8761987-8762063,8762163-8762310,876...    98   7e-21
01_06_0768 - 31829753-31829851,31830454-31830593,31830729-318308...    67   2e-11
10_08_0301 - 16619499-16619675,16619770-16619853,16619932-166200...    58   1e-08
10_04_0002 - 7372425-7372601,7372697-7372780,7372859-7373010,737...    36   0.057
04_04_1163 - 31398565-31398654,31398729-31398812,31398893-313990...    29   6.6  

>08_01_0890 -
           8761787-8761910,8761987-8762063,8762163-8762310,
           8762430-8762490,8764714-8764938,8764990-8765170
          Length = 271

 Score = 98.3 bits (234), Expect = 7e-21
 Identities = 60/175 (34%), Positives = 91/175 (52%), Gaps = 5/175 (2%)
 Frame = +3

Query: 324 YTVGFQKVASRYGKKFTFELKSRIMGQQTREFAGNIIKY--LDLPLTIEDFVSETRQIFE 497
           YT   +K+ +RYGK F + LK+++MG++  E A   +    LD  LT E F+ E   + +
Sbjct: 66  YTEVQEKILARYGKVFDWSLKAKMMGKKATESARIFVDECGLDGLLTPEQFLEERESMLQ 125

Query: 498 ELFPQSEILPGVKKLIYHLNQHNIPMGLATSSSKESYELKTLKHQDLFDLFSHKTLGLFR 677
           ELFP   +LPGV +LI+HL+ + +PM +AT S K  + LKT  H+++F L  H  +G   
Sbjct: 126 ELFPSCAVLPGVLRLIHHLHANGVPMAVATGSHKRHFALKTQNHKEMFTLMHHVVMG--- 182

Query: 678 SRREEXESHTXXXXXXXXXXXRXTGIXKVSR---FEDSINGVKXXXXXGMQVVMV 833
               + ++             R  G  + S    FED+ +GV      GM  VMV
Sbjct: 183 -DDPDVKTGKPSPDIFLAAMRRFEGNIEPSNCLVFEDAPSGVAAAKNAGMYAVMV 236


>01_06_0768 -
           31829753-31829851,31830454-31830593,31830729-31830818,
           31830905-31831059,31831598-31831663,31831862-31831931,
           31832299-31832429,31832516-31832702,31832828-31832894
          Length = 334

 Score = 66.9 bits (156), Expect = 2e-11
 Identities = 34/99 (34%), Positives = 60/99 (60%)
 Frame = +3

Query: 357 YGKKFTFELKSRIMGQQTREFAGNIIKYLDLPLTIEDFVSETRQIFEELFPQSEILPGVK 536
           YGK    E + R +GQ  RE    II    LPLT+E++      ++ + + +++ LPGV+
Sbjct: 37  YGKVPDKEKEERRLGQMYRESTTGIIADYGLPLTVEEYAVAIYPLYLKRWQKAKPLPGVE 96

Query: 537 KLIYHLNQHNIPMGLATSSSKESYELKTLKHQDLFDLFS 653
           +L+ HL+++ +P+ LA++S + + + K LK +D  D FS
Sbjct: 97  RLVKHLHRNGVPLALASNSVRRNIDHKLLKLKDWKDCFS 135


>10_08_0301 -
           16619499-16619675,16619770-16619853,16619932-16620083,
           16620296-16620391,16620473-16620627,16620791-16620856,
           16620993-16621062,16621175-16621305,16622121-16622307,
           16622410-16622485
          Length = 397

 Score = 57.6 bits (133), Expect = 1e-08
 Identities = 43/159 (27%), Positives = 70/159 (44%), Gaps = 1/159 (0%)
 Frame = +3

Query: 360 GKKFTFELKSRIMGQQTREFAGNIIKYLDLPLTIEDFVSETRQIFEELFPQSEILPGVKK 539
           GKK+  +   +++G+   E A  +++   LP + E+F+S    +F E +   + LPG  +
Sbjct: 41  GKKWDSKKAHKLVGKTPYEAAAVVLEDYGLPYSTEEFLSMLTPMFNEQWCNIKALPGANR 100

Query: 540 LIYHLNQHNIPMGLATSSSKESYELKTLKHQDLFDLFSHKTLGLFRSRREEXESHTXXXX 719
           LI HL  + +P  LA++S + + + K   HQ   + FS    G      +E E       
Sbjct: 101 LIKHLKSNGVPAALASNSPRSNIDAKISCHQGWKESFSAIVGG------DEVEKGKPSPD 154

Query: 720 XXXXXXXR-XTGIXKVSRFEDSINGVKXXXXXGMQVVMV 833
                  R  T        EDS+ GV      GM V+ V
Sbjct: 155 IFLEAAKRMNTNPPNCLVIEDSLPGVAAGKAAGMHVIAV 193


>10_04_0002 -
           7372425-7372601,7372697-7372780,7372859-7373010,
           7373229-7373324,7373406-7373554,7373723-7373788,
           7373925-7373994,7374106-7374236,7376464-7376471,
           7377946-7378002
          Length = 329

 Score = 35.5 bits (78), Expect = 0.057
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = +3

Query: 522 LPGVKKLIYHLNQHNIPMGLATSSSKESYELKTLKHQDLFDLFS 653
           LPG  +LI HL  + +P  LA++S   + E K   HQ   + FS
Sbjct: 29  LPGANRLIKHLKSNGVPAALASNSPGSNIEAKISCHQGWKESFS 72


>04_04_1163 -
           31398565-31398654,31398729-31398812,31398893-31399037,
           31399118-31399239,31399338-31399376,31399491-31399601,
           31399682-31399804,31399946-31400032,31400136-31400207,
           31400349-31400621,31400704-31400895,31400988-31401171,
           31401339-31401480,31401578-31401821,31401959-31402603,
           31403024-31403293
          Length = 940

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +2

Query: 332 RVSKSGLALRQKVHVRIKKSDNGTADERVCREHNKISRFASYNRRFCIRDTSN 490
           R+ + G+    K +  I  SD     ++   EH K  RF +    FCIR+  N
Sbjct: 228 RIPECGVFASLKANSAIGGSDYQDMIDQALNEHFKFDRFLARGDVFCIRNNWN 280


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,035,846
Number of Sequences: 37544
Number of extensions: 362492
Number of successful extensions: 779
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)