Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_A12
         (897 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    30   0.39 
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    27   4.8  
SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po...    26   6.3  
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    26   6.3  

>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 22/87 (25%), Positives = 43/87 (49%)
 Frame = -1

Query: 528 VDLFLHIVLFFTF*VLCICFNFIFSNHLPVYNIIFINLLESRYSINFSIFYTKSISPGIT 349
           + LF  ++LFF F +  + F+F FS  L   + IFI    S   ++F  F+   +   ++
Sbjct: 110 LSLFRCLLLFFFFLLFFLSFSFSFS-FLFFLSQIFIVYFSSFPILHFLFFFFLCVCVFLS 168

Query: 348 WRYGFFFVTFNSIVVSPISLSFISTIN 268
           + +    +   +I+  P+ L   ST++
Sbjct: 169 FLFSLSHLLSLAILFLPLLLRVFSTLS 195


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = +1

Query: 94   TWPDSAVFILSSSIMIYKWWHAFVRKRTKPIPEDKAILWKRRLS--FAYALFAWNAFGLV 267
            TWP  A+ +L+ + ++Y+    F R+    IP     L++RRL   F  ++F  N +   
Sbjct: 2143 TWP-IALVLLAIAFVVYRGLPNFYRQCPSKIPAFYRSLFRRRLIMWFFISVFLQNYWMSS 2201

Query: 268  VY 273
            VY
Sbjct: 2202 VY 2203


>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = -1

Query: 429 IFINLLESRYSINFSIFYTKSISPGITWRYGFFFVTFNSIVVSPI 295
           +++N  E  Y+ +F  F+ +  +PG      F  V+FN++ V+P+
Sbjct: 533 LYVNNGEKTYTNDF--FFLQGATPGQISFAAFQGVSFNNVTVTPL 575


>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +2

Query: 47  IKNYTVHFNNLRVKRKPGRTRP 112
           I N   H N  R+K KPG T P
Sbjct: 201 INNQVAHANYRRLKGKPGTTNP 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,373,800
Number of Sequences: 5004
Number of extensions: 67257
Number of successful extensions: 157
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)