Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_A11
         (922 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647     31   1.3  
07_03_1136 + 24218601-24218734,24218769-24219906                       29   3.9  
05_01_0521 + 4500268-4500283,4500364-4500680,4500999-4501094,450...    29   6.9  

>01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647
          Length = 252

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 18/51 (35%), Positives = 18/51 (35%)
 Frame = +3

Query: 468 PPXKPXPPGFXVGEXXFPPPKGXXRFXPKXGXXPXKKFLTKGPXKXQNPKK 620
           P  KP PP    G    PP  G     PK G  P  K    GP     P K
Sbjct: 163 PKPKPSPPKPKPGPKPKPPKPGPKPKPPKPGPKPKPKPPKPGPKPKPKPPK 213


>07_03_1136 + 24218601-24218734,24218769-24219906
          Length = 423

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 16/39 (41%), Positives = 17/39 (43%)
 Frame = -1

Query: 532 PXGGGKXXSPTXKPGGXGXXGGXREXXPKKKXXXPGGGG 416
           P GGG    P   PGG G  GG     P +     GGGG
Sbjct: 173 PGGGGGGGGPGRAPGGGGGGGG-----PGRAPGGGGGGG 206



 Score = 29.5 bits (63), Expect = 3.9
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -1

Query: 526 GGGKXXSPTXKPGGXGXXGGXREXXPKKKXXXPGGGG 416
           GGG   +P    GG G  GG  E    ++    GGGG
Sbjct: 192 GGGPGRAPGGGGGGGGLGGGGGEGGAPERVIGGGGGG 228



 Score = 28.3 bits (60), Expect = 9.1
 Identities = 18/48 (37%), Positives = 19/48 (39%)
 Frame = -1

Query: 559 PXXGXXRXXPXGGGKXXSPTXKPGGXGXXGGXREXXPKKKXXXPGGGG 416
           P  G     P GGG    P+  PG  G  GG R   P       GGGG
Sbjct: 100 PLGGGGARPPGGGGGGGPPSLPPGA-GGGGGARPPAP----GGGGGGG 142


>05_01_0521 +
           4500268-4500283,4500364-4500680,4500999-4501094,
           4501219-4501296,4501333-4501557,4502842-4502910,
           4502946-4503200
          Length = 351

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = -1

Query: 526 GGGKXXSPTXKPGGXGXXGGXREXXPKKKXXXPGGGG 416
           GGG+        GG G  GG     P+ +    GGGG
Sbjct: 25  GGGRGFGRVGDSGGRGGRGGRGGRTPRGRGGGRGGGG 61


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,773,919
Number of Sequences: 37544
Number of extensions: 142009
Number of successful extensions: 256
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2624101760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)