Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_A08
(854 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0686 - 30900748-30902167,30903442-30904742 34 0.13
12_02_0118 - 13869237-13869307,13869375-13869465,13870321-138704... 33 0.38
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 33 0.38
03_03_0118 + 14597863-14597929,14598844-14599806,14599909-145999... 31 0.89
07_01_0080 + 587674-588510 31 1.2
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 31 1.5
05_01_0142 - 940421-940701,941262-941574 31 1.5
03_01_0515 - 3864796-3865425 30 2.0
06_01_0747 - 5587261-5587356,5587472-5587855,5588133-5588192,558... 29 3.6
01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647 29 4.7
03_05_0062 + 20370608-20370977,20371062-20371541,20371661-203717... 24 5.5
07_03_0792 - 21541301-21542143,21542426-21542661,21543177-215433... 29 6.2
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 28 8.3
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 34.3 bits (75), Expect = 0.13
Identities = 18/48 (37%), Positives = 18/48 (37%)
Frame = +3
Query: 429 PXXKKXPPPGGXKXXXXGPPXKXPPPPXGXXKKWGGXXPXXGXKKKXP 572
P K PPP K PP K PPPP P G KK P
Sbjct: 330 PPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGP 377
Score = 31.1 bits (67), Expect = 1.2
Identities = 16/30 (53%), Positives = 16/30 (53%)
Frame = +3
Query: 426 GPXXKKXPPPGGXKXXXXGPPXKXPPPPXG 515
GP PPPGG K GPP PPPP G
Sbjct: 361 GPSPPPPPPPGGKK---GGPP---PPPPKG 384
Score = 30.3 bits (65), Expect = 2.0
Identities = 18/52 (34%), Positives = 19/52 (36%), Gaps = 4/52 (7%)
Frame = +3
Query: 429 PXXKKXPPPGGXKXXXXGPPXKXP----PPPXGXXKKWGGXXPXXGXKKKXP 572
P K PPP K PP K P PPP G K P G + P
Sbjct: 339 PPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPKGGASRPP 390
Score = 29.1 bits (62), Expect = 4.7
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +3
Query: 429 PXXKKXPPPGGXKXXXXGPPXKXPPPP 509
P PPP K PP K PPPP
Sbjct: 321 PAAAAPPPPPPPKAAPPPPPPKGPPPP 347
>12_02_0118 -
13869237-13869307,13869375-13869465,13870321-13870440,
13870668-13870795,13871159-13871270,13871719-13871817,
13871918-13871992,13872099-13872320,13873177-13874034
Length = 591
Score = 32.7 bits (71), Expect = 0.38
Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Frame = +3
Query: 405 KPXXXGGGPXXKKXPPP-GGXKXXXXGPPXKXPPPPXGXXKKWGGXXP 545
+P GG P P P GG + GPP P G +W G P
Sbjct: 202 QPPPFGGPPGAAPQPAPTGGLRTPYGGPPAPSQQVPFGGAPQWPGTQP 249
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 32.7 bits (71), Expect = 0.38
Identities = 15/46 (32%), Positives = 16/46 (34%)
Frame = +3
Query: 408 PXXXGGGPXXKKXPPPGGXKXXXXGPPXKXPPPPXGXXKKWGGXXP 545
P G G PPP P PPPP G + GG P
Sbjct: 340 PSAAGAGSGPPPPPPPAAPAAPRPPGPGPGPPPPPGAAGRGGGGPP 385
>03_03_0118 +
14597863-14597929,14598844-14599806,14599909-14599936,
14600288-14600666
Length = 478
Score = 31.5 bits (68), Expect = 0.89
Identities = 17/54 (31%), Positives = 17/54 (31%)
Frame = +3
Query: 420 GGGPXXKKXPPPGGXKXXXXGPPXKXPPPPXGXXKKWGGXXPXXGXKKKXPXGG 581
G P PP G PP PP G GG P G P GG
Sbjct: 365 GASPPTTLSPPAGLTPPVGTSPPTDFSPPAAGTTPPAGGFTPPAGGFGTPPLGG 418
>07_01_0080 + 587674-588510
Length = 278
Score = 31.1 bits (67), Expect = 1.2
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = +2
Query: 407 TXPXXGGPPXXKXSPPXGXXXPXXGAPXKKXPPPP 511
T P GG + PP P G+P PPPP
Sbjct: 78 TPPRLGGDGMFRRPPPPPPPPPSSGSPPPPPPPPP 112
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 30.7 bits (66), Expect = 1.5
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +3
Query: 429 PXXKKXPPPGGXKXXXXGPPXKXPPPP 509
P PPP G K PP PPPP
Sbjct: 546 PPPPPPPPPSGNKPAFSPPPPPPPPPP 572
>05_01_0142 - 940421-940701,941262-941574
Length = 197
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/39 (35%), Positives = 15/39 (38%)
Frame = +2
Query: 428 PPXXKXSPPXGXXXPXXGAPXKKXPPPPXXXXKMGGXXP 544
PP PP G P G P PPP + GG P
Sbjct: 56 PPPGAYPPPPGAYPPQHGYPQPGGYPPPGGYPQHGGYPP 94
>03_01_0515 - 3864796-3865425
Length = 209
Score = 30.3 bits (65), Expect = 2.0
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = +2
Query: 413 PXXGGPPXXKXSPPXGXXXPXXGAPXKKXPPPP 511
P PP SPP P +P K PPPP
Sbjct: 87 PLPPPPPPPAASPPPPPPSPPPPSPVKSSPPPP 119
Score = 29.1 bits (62), Expect = 4.7
Identities = 12/34 (35%), Positives = 12/34 (35%)
Frame = +3
Query: 408 PXXXGGGPXXKKXPPPGGXKXXXXGPPXKXPPPP 509
P GP PPP PP PPPP
Sbjct: 61 PPPPAAGPLMPPPPPPPSVTSSPPPPPLPPPPPP 94
>06_01_0747 -
5587261-5587356,5587472-5587855,5588133-5588192,
5588428-5588484,5588663-5588800,5588901-5588966,
5589234-5589452,5589522-5589737,5589813-5589884,
5589952-5590205,5590356-5590525,5590840-5591029,
5592211-5592331,5592838-5592921,5593003-5593365,
5594530-5594724,5594938-5595933,5596329-5596370
Length = 1240
Score = 29.5 bits (63), Expect = 3.6
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 446 SPPXGXXXPXXGAPXKKXPPPP 511
SPP G P AP ++ PPPP
Sbjct: 14 SPPGGFPTPTAVAPRRRAPPPP 35
>01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647
Length = 252
Score = 29.1 bits (62), Expect = 4.7
Identities = 15/42 (35%), Positives = 16/42 (38%)
Frame = +3
Query: 405 KPXXXGGGPXXKKXPPPGGXKXXXXGPPXKXPPPPXGXXKKW 530
KP GP K PP G K PP P P G + W
Sbjct: 186 KPKPPKPGPKPKPKPPKPGPKPKPK-PPKPGPKPKPGPPQPW 226
>03_05_0062 +
20370608-20370977,20371062-20371541,20371661-20371731,
20371836-20371912,20372076-20372223,20372346-20372507,
20372743-20372940
Length = 501
Score = 23.8 bits (49), Expect(2) = 5.5
Identities = 10/29 (34%), Positives = 11/29 (37%)
Frame = +3
Query: 429 PXXKKXPPPGGXKXXXXGPPXKXPPPPXG 515
P P P PP + PPPP G
Sbjct: 2 PSPGTPPSPPTTLITTQAPPIQPPPPPGG 30
Score = 23.4 bits (48), Expect(2) = 5.5
Identities = 8/16 (50%), Positives = 8/16 (50%)
Frame = +3
Query: 498 PPPPXGXXKKWGGXXP 545
PPPP WGG P
Sbjct: 57 PPPPAPSVGAWGGNVP 72
>07_03_0792 -
21541301-21542143,21542426-21542661,21543177-21543373,
21543459-21544173,21544250-21544892,21545970-21546139,
21546442-21546943
Length = 1101
Score = 28.7 bits (61), Expect = 6.2
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = +3
Query: 429 PXXKKXPPPGGXKXXXXGPPXKXPPPPXGXXK 524
P K PPP K GPP PP G K
Sbjct: 593 PAPKAAPPPPPPKSTGPGPPRPPPPAMPGSSK 624
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +2
Query: 422 GGPPXXKXSPPXGXXXPXXGAPXKKXPPPP 511
G PP SPP P P PPPP
Sbjct: 1145 GPPPLPSDSPPCQPPLPPSPPPATPPPPPP 1174
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,117,175
Number of Sequences: 37544
Number of extensions: 442568
Number of successful extensions: 1044
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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