Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_A07
         (900 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...   208   8e-55
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...   143   3e-35
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    27   3.6  
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    27   4.8  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        26   6.3  
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    26   8.4  

>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score =  208 bits (508), Expect = 8e-55
 Identities = 113/215 (52%), Positives = 137/215 (63%), Gaps = 3/215 (1%)
 Frame = +2

Query: 263 VLSEIQQRCFSVSPLTAA--AAQVAMSKFDKVP-LPYEKLTKNLEVVKKRLGRELTLSEK 433
           + ++   R FS +P+ A   A +VAMS F+K   + Y+++  NLE+VKKRL R LT SEK
Sbjct: 5   IFTQSTLRSFSCAPVAANIDAKKVAMSNFEKNKFINYQRIKDNLEIVKKRLNRPLTYSEK 64

Query: 434 ILYSHLDDPKGQEIERGASYLRLRPDRVAMQDATAQMAMLQFISSGLPRVAVPSTIHCDH 613
           ILY HLDDP  Q+IERG SYL+LRPDRVA QDATAQMA+LQF+S+G+P VAVP T+HCDH
Sbjct: 65  ILYGHLDDPVNQDIERGVSYLKLRPDRVACQDATAQMAILQFMSAGMPEVAVPVTVHCDH 124

Query: 614 LIEAQVGGEKDLARAKDLNKEVYKFLKTAGAKYGVGFWKPRLWYYPSDHSGELCVPWXYS 793
           LIEA  GG  DL RA   NKEVY FL+TA AKY +GFW+P               P    
Sbjct: 125 LIEAYEGGPIDLERANVTNKEVYDFLQTACAKYNIGFWRPGSGIIHQIVLENYAFPGGLL 184

Query: 794 *SXQTSHTPNGGGPGWIXXXXXXXXMPVDLMATXP 898
                SHTPN GG G +          VD+MA  P
Sbjct: 185 -IGTDSHTPNAGGLGMVAIGVGGAD-AVDVMANLP 217


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score =  143 bits (347), Expect = 3e-35
 Identities = 82/187 (43%), Positives = 108/187 (57%), Gaps = 7/187 (3%)
 Frame = +2

Query: 305 LTAAAAQVAMSKFDKVPLPYEKLTKNLEVVKKRL-GRELTLSEKILYSHLDDPK------ 463
           L AA  Q   S+   V  PYEKL   L+ V+K L G++LTL+EK+LYSHL +P+      
Sbjct: 19  LVAARFQSTASRASYVTPPYEKLMGKLQQVRKFLPGQKLTLAEKVLYSHLVNPEESFSGV 78

Query: 464 GQEIERGASYLRLRPDRVAMQDATAQMAMLQFISSGLPRVAVPSTIHCDHLIEAQVGGEK 643
                RG+ YL+L PDRVAMQDA+AQMA+LQF++ GL +  +P++IHCDHLI    G   
Sbjct: 79  SPSDIRGSLYLKLNPDRVAMQDASAQMALLQFMTCGLEKTMIPASIHCDHLIVGHRGANS 138

Query: 644 DLARAKDLNKEVYKFLKTAGAKYGVGFWKPRLWYYPSDHSGELCVPWXYS*SXQTSHTPN 823
           D+  +   NKE++ FL++A  KYG+ FW P               P         SHTPN
Sbjct: 139 DIPDSIANNKEIFDFLQSAAKKYGIQFWGPGSGIIHQIVLENYAAPGGMM-LGTDSHTPN 197

Query: 824 GGGPGWI 844
            GG G I
Sbjct: 198 AGGLGMI 204


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 878 PQASAPXTPXTQSTQGHLH*VCGKSVPIMSR 786
           PQAS+P  P T++ Q     V G+ VP +++
Sbjct: 174 PQASSPTAPNTEANQQRSGSVPGRIVPALTQ 204


>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = -3

Query: 727 PEPDSIFSSGSL*ELVYFFVEVLSPGQILLASDLGFDQV---ITMNGG 593
           P+ + + ++G+       F   L+PG  ++  +  FDQ    ITMNGG
Sbjct: 93  PDTEIVVTAGANEGFFSVFAAFLNPGDEVIVMEPFFDQYISNITMNGG 140


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 259  GGTL*NPTKMFQRISIDRRRGPGGNVQVRQGTLA 360
            GG++ N  +   ++ ID  R PG  + V QG+ A
Sbjct: 1226 GGSIINKIRKIAQVKIDVPRTPGDEIVVVQGSRA 1259


>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 335 SKFDKVPLPYEKLTKNLEVVKKR 403
           +KFD+V +PY+ +  ++E   KR
Sbjct: 396 AKFDEVDMPYDTIWLDIEYASKR 418


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,703,961
Number of Sequences: 5004
Number of extensions: 76976
Number of successful extensions: 210
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)