Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_A07
         (900 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0032 + 14112354-14112417,14112471-14112549,14114435-141145...    30   2.9  
06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943...    29   3.8  
06_03_0998 - 26742608-26742802,26743137-26743325,26743600-267436...    29   6.7  
12_01_0559 + 4527769-4527924,4528038-4528129,4528799-4528905,452...    28   8.8  
04_01_0519 + 6831912-6831978,6832333-6832488,6832748-6833098,683...    28   8.8  

>02_03_0032 +
           14112354-14112417,14112471-14112549,14114435-14114551,
           14114721-14114802,14115734-14115868,14115948-14116123,
           14116219-14116370,14116433-14117622
          Length = 664

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 1/113 (0%)
 Frame = +2

Query: 338 KFDKVPLPYEKLTKNLEVVKKRLGRELTLSEKILYSHLDDPKGQEI-ERGASYLRLRPDR 514
           +FD  P P E+      +   +  RE+   +  L++H    K +E+   G   +   PD 
Sbjct: 259 QFDVAPKPLEETKSYTAIAVLQQMREMVHMKAKLFAHPSPAKQKEVLFEGMLLISNSPDS 318

Query: 515 VAMQDATAQMAMLQFISSGLPRVAVPSTIHCDHLIEAQVGGEKDLARAKDLNK 673
           V  Q + +       +SS  P +  P+    DHL   QV   +D+   +D +K
Sbjct: 319 VLTQSSLS-------VSSSSPEIGDPN----DHL---QVDSSQDIVHIEDRSK 357


>06_02_0297 -
           13891954-13892556,13893019-13893855,13894179-13894394,
           13895455-13895874,13896198-13896506
          Length = 794

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -3

Query: 373 QLFVRQGYLVELGHCHLGRGGGQWRYAETSLLD-FREYHPCPASPGHAKLSYSAPWSPDF 197
           +L  +  Y  ++ H  + +G   WR   TSL+D FR    C    G   L ++  W+ DF
Sbjct: 609 KLISQSYYDSKVPHLMMNKGSFWWRDV-TSLVDIFRGIAKCEIRTGRTALFWNDLWNDDF 667

Query: 196 SILN 185
             ++
Sbjct: 668 KCIS 671


>06_03_0998 -
           26742608-26742802,26743137-26743325,26743600-26743657,
           26743990-26744056,26744368-26746504
          Length = 881

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -3

Query: 379 LRQLFVRQGYLVELGHCHLGRGGGQWRYAETSLLD 275
           LR+LF       ELG C LGRG  Q      +LL+
Sbjct: 203 LRELFASDAVAFELGGCELGRGLPQESELTATLLN 237


>12_01_0559 +
           4527769-4527924,4528038-4528129,4528799-4528905,
           4528987-4529042,4529196-4529346,4530223-4530528,
           4530753-4531597
          Length = 570

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 27/105 (25%), Positives = 48/105 (45%)
 Frame = +2

Query: 230 FCMARASRTRVVLSEIQQRCFSVSPLTAAAAQVAMSKFDKVPLPYEKLTKNLEVVKKRLG 409
           FC+A+  R  + LS I +RC     + AA   + M+  +      EKL K   +   ++ 
Sbjct: 342 FCLAKLLRKLLSLSIIDERCI----IDAALVLIEMATNN----VQEKLRKLPMLSLGKVA 393

Query: 410 RELTLSEKILYSHLDDPKGQEIERGASYLRLRPDRVAMQDATAQM 544
           R+ TL E    +   +   +++E   S L+ +  R+A  D  A +
Sbjct: 394 RDSTLPEPTKETESVEEATEKLEMFKSRLKQKDLRLAENDTGASL 438


>04_01_0519 +
           6831912-6831978,6832333-6832488,6832748-6833098,
           6833481-6833662,6833756-6834004,6834182-6834406,
           6837492-6837791,6838642-6839215,6839959-6840059
          Length = 734

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -3

Query: 352 YLVELGHCHLGRGGGQWRYAETSLLD-FREYHPCPASPGHAKLSYSAPWSPDF 197
           Y+  + H  L +G   WR   TSL D FR    C    G   L ++  W+ DF
Sbjct: 581 YVSRVPHLVLNKGSFWWRDI-TSLSDIFRGIAKCTIQSGATALFWNDLWNDDF 632


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,756,429
Number of Sequences: 37544
Number of extensions: 617252
Number of successful extensions: 1571
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1571
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)