Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_A07
(900 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L25599-7|AAA28050.2| 777|Caenorhabditis elegans Aconitase prote... 235 4e-62
L25599-9|AAN63393.1| 683|Caenorhabditis elegans Aconitase prote... 143 1e-34
L25599-8|AAL65788.1| 665|Caenorhabditis elegans Aconitase prote... 105 4e-23
Z81063-4|CAB02955.1| 209|Caenorhabditis elegans Hypothetical pr... 32 0.49
Z83224-2|CAE17796.1| 208|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z81125-11|CAE17965.1| 208|Caenorhabditis elegans Hypothetical p... 30 2.0
Z81125-7|CAJ85774.1| 84|Caenorhabditis elegans Hypothetical pr... 30 2.6
Z50740-2|CAA90608.1| 383|Caenorhabditis elegans Hypothetical pr... 29 6.0
>L25599-7|AAA28050.2| 777|Caenorhabditis elegans Aconitase protein
2, isoform a protein.
Length = 777
Score = 235 bits (574), Expect = 4e-62
Identities = 124/194 (63%), Positives = 140/194 (72%), Gaps = 1/194 (0%)
Frame = +2
Query: 320 AQVAMSKFD-KVPLPYEKLTKNLEVVKKRLGRELTLSEKILYSHLDDPKGQEIERGASYL 496
++VA+SKF+ K LPYEKL++ +++VK RL R LTLSEKILY HLD PK Q+IERG SYL
Sbjct: 27 SKVAISKFEPKSYLPYEKLSQTVKIVKDRLKRPLTLSEKILYGHLDQPKTQDIERGVSYL 86
Query: 497 RLRPDRVAMQDATAQMAMLQFISSGLPRVAVPSTIHCDHLIEAQVGGEKDLARAKDLNKE 676
RLRPDRVAMQDATAQMAMLQFISSGLP+ AVPSTIHCDHLIEAQ GG +DLARAKDLNKE
Sbjct: 87 RLRPDRVAMQDATAQMAMLQFISSGLPKTAVPSTIHCDHLIEAQKGGAQDLARAKDLNKE 146
Query: 677 VYKFLKTAGAKYGVGFWKPRLWYYPSDHSGELCVPWXYS*SXQTSHTPNGGGPGWIXXXX 856
V+ FL TAG+KYGVGFWKP P SHTPNGGG G +
Sbjct: 147 VFNFLATAGSKYGVGFWKPGSGIIHQIILENYAFPGLLL-IGTDSHTPNGGGLGGLCIGV 205
Query: 857 XXXXMPVDLMATXP 898
VD+MA P
Sbjct: 206 GGAD-AVDVMADIP 218
>L25599-9|AAN63393.1| 683|Caenorhabditis elegans Aconitase protein
2, isoform c protein.
Length = 683
Score = 143 bits (347), Expect = 1e-34
Identities = 77/126 (61%), Positives = 83/126 (65%)
Frame = +2
Query: 521 MQDATAQMAMLQFISSGLPRVAVPSTIHCDHLIEAQVGGEKDLARAKDLNKEVYKFLKTA 700
MQDATAQMAMLQFISSGLP+ AVPSTIHCDHLIEAQ GG +DLARAKDLNKEV+ FL TA
Sbjct: 1 MQDATAQMAMLQFISSGLPKTAVPSTIHCDHLIEAQKGGAQDLARAKDLNKEVFNFLATA 60
Query: 701 GAKYGVGFWKPRLWYYPSDHSGELCVPWXYS*SXQTSHTPNGGGPGWIXXXXXXXXMPVD 880
G+KYGVGFWKP P SHTPNGGG G + VD
Sbjct: 61 GSKYGVGFWKPGSGIIHQIILENYAFPGLLL-IGTDSHTPNGGGLGGLCIGVGGAD-AVD 118
Query: 881 LMATXP 898
+MA P
Sbjct: 119 VMADIP 124
>L25599-8|AAL65788.1| 665|Caenorhabditis elegans Aconitase protein
2, isoform b protein.
Length = 665
Score = 105 bits (252), Expect = 4e-23
Identities = 53/77 (68%), Positives = 63/77 (81%), Gaps = 1/77 (1%)
Frame = +2
Query: 320 AQVAMSKFD-KVPLPYEKLTKNLEVVKKRLGRELTLSEKILYSHLDDPKGQEIERGASYL 496
++VA+SKF+ K LPYEKL++ +++VK RL R LTLSEKILY HLD PK Q+IERG SYL
Sbjct: 27 SKVAISKFEPKSYLPYEKLSQTVKIVKDRLKRPLTLSEKILYGHLDQPKTQDIERGVSYL 86
Query: 497 RLRPDRVAMQDATAQMA 547
RLRPDRVAMQDA MA
Sbjct: 87 RLRPDRVAMQDAVDVMA 103
>Z81063-4|CAB02955.1| 209|Caenorhabditis elegans Hypothetical
protein F15D3.6 protein.
Length = 209
Score = 32.3 bits (70), Expect = 0.49
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +2
Query: 326 VAMSKFDKVPLPYEKLTKNLEVVKKRLGRELTLSEKILYSHLDDP 460
VA + F K P P + ++VVK+ L L+E+I+ SH P
Sbjct: 17 VAQAAFRKYPNPLNRSITGIDVVKQTLEAGKILTERIIQSHFSIP 61
>Z83224-2|CAE17796.1| 208|Caenorhabditis elegans Hypothetical
protein F29C6.1a protein.
Length = 208
Score = 30.3 bits (65), Expect = 2.0
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Frame = +2
Query: 506 PDRVAMQDATAQMAMLQFIS--SGLPRVAV-PSTIHCDHLIEAQVGG----EKDLARAKD 664
P M A A+ F+ +G+P + + T+H D LIE Q+ G EKD ++ +D
Sbjct: 120 PSSTYMSHAYAKNFTPVFVKDENGIPFIYIFKETVHADGLIEDQIAGMSLKEKDESKVED 179
Query: 665 LNKEVYKFLK 694
N+EV + +K
Sbjct: 180 -NEEVVEEVK 188
>Z81125-11|CAE17965.1| 208|Caenorhabditis elegans Hypothetical
protein F29C6.1a protein.
Length = 208
Score = 30.3 bits (65), Expect = 2.0
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Frame = +2
Query: 506 PDRVAMQDATAQMAMLQFIS--SGLPRVAV-PSTIHCDHLIEAQVGG----EKDLARAKD 664
P M A A+ F+ +G+P + + T+H D LIE Q+ G EKD ++ +D
Sbjct: 120 PSSTYMSHAYAKNFTPVFVKDENGIPFIYIFKETVHADGLIEDQIAGMSLKEKDESKVED 179
Query: 665 LNKEVYKFLK 694
N+EV + +K
Sbjct: 180 -NEEVVEEVK 188
>Z81125-7|CAJ85774.1| 84|Caenorhabditis elegans Hypothetical
protein F29C6.1b protein.
Length = 84
Score = 29.9 bits (64), Expect = 2.6
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 5/48 (10%)
Frame = +2
Query: 566 SGLPRVAV-PSTIHCDHLIEAQVGG----EKDLARAKDLNKEVYKFLK 694
+G+P + + T+H D LIE Q+ G EKD ++ +D N+EV + +K
Sbjct: 18 NGIPFIYIFKETVHADGLIEDQIAGMSLKEKDESKVED-NEEVVEEVK 64
>Z50740-2|CAA90608.1| 383|Caenorhabditis elegans Hypothetical
protein F31B12.3 protein.
Length = 383
Score = 28.7 bits (61), Expect = 6.0
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = +2
Query: 341 FDKVPLPYEKLTKNLEVVKKRLGRELTLSEKILYSHLD 454
FDKV P K KN+ + K +L L LS KIL+ D
Sbjct: 128 FDKVVKP--KTGKNIVIYKVKLLTNLNLSNKILFQFQD 163
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,981,692
Number of Sequences: 27780
Number of extensions: 456967
Number of successful extensions: 1120
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -