Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_A05
         (930 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...   203   2e-53
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    55   2e-08
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    46   1e-05
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...    28   1.6  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   8.7  
SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces pom...    26   8.7  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score =  203 bits (496), Expect = 2e-53
 Identities = 99/185 (53%), Positives = 124/185 (67%), Gaps = 1/185 (0%)
 Frame = +2

Query: 242 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 421
           NPLF  RP++F IGQ IQP RDLSRFV+WP+YIR+QR++ +L  RLKVPP I QF +TLD
Sbjct: 24  NPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLD 83

Query: 422 KTTAKGLFKILEKYRPET-XXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLV 598
           K TA  +FK+L KYRPET                          +P  ++ G N V  L+
Sbjct: 84  KNTATQVFKLLNKYRPETAAEKKQRLVAEAEAVANGKSAQDVSKKPYNVKYGLNHVVALI 143

Query: 599 EKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVXGKSRLGALVHRKTCTCLALTNV 778
           E KKA+LV+IA DVDPIELV+FLPALC+KMGVPY IV  K+RLG ++H+KT   LA+T V
Sbjct: 144 EAKKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNKARLGTVIHQKTAAVLAVTEV 203

Query: 779 ESGDR 793
              D+
Sbjct: 204 REEDK 208


>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 54.8 bits (126), Expect = 2e-08
 Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
 Frame = +2

Query: 563 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVXGKSRLGAL-- 736
           +R G N  TK + +  ++ +V+A D +PIE++L LP LC    VPY  V  K+ LG    
Sbjct: 32  LRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAALGRACG 91

Query: 737 VHRKTCTCLALTNVESGDRALQV 805
           V R   +    TN E+ D   Q+
Sbjct: 92  VSRPVISASITTN-EASDLLPQI 113


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 45.6 bits (103), Expect = 1e-05
 Identities = 22/65 (33%), Positives = 32/65 (49%)
 Frame = +2

Query: 563 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVXGKSRLGALVH 742
           I  G   V K V K +  LV++A D+ P++++  +P LC    VPY     K  LG   +
Sbjct: 54  ILRGVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTVSKELLGEASN 113

Query: 743 RKTCT 757
            K  T
Sbjct: 114 TKRPT 118


>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 179

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -2

Query: 809 FRLGERGHQTPHLLELSMCMSCGVQVHRGGTC 714
           +  GE GHQ     + S+C +C    H+   C
Sbjct: 20  YNCGENGHQARECTKGSICYNCNQTGHKASEC 51


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 356 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 457
           KAVL   LK  P IN F + L     + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496


>SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 188

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 559 YHPIRHKHSHQAGREEEGAACGHR 630
           + P  HKH++    +EE  +C HR
Sbjct: 149 FQPNGHKHTYAEMTDEERNSCSHR 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,118,264
Number of Sequences: 5004
Number of extensions: 56369
Number of successful extensions: 158
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)