Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_A02
(952 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 41 3e-04
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 40 4e-04
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.045
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.24
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 30 0.42
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 0.73
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 29 0.96
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 28 1.7
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 26 6.8
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch... 26 9.0
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 26 9.0
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 40.7 bits (91), Expect = 3e-04
Identities = 33/136 (24%), Positives = 35/136 (25%), Gaps = 1/136 (0%)
Frame = +3
Query: 444 PXPPPXKKXXXPXGPPPXXPQXXPPPXGXPXGXGPPPGAPXXGXXXXXPXPXGXXTXXKX 623
P PPP + PPP PP G P P
Sbjct: 291 PLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGS 350
Query: 624 XXXXXXGXXXXGXPPPXGXAPSXXXXPPXXGXRX*KKGEXPPPXGVXXRGXP-LPSXNXX 800
G PPP APS PP PP + R P LP
Sbjct: 351 IPLPPQGRSAPPPPPPRS-APSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNA 409
Query: 801 PPPXXSPXXTPPXXPP 848
P TPP PP
Sbjct: 410 SRTSTPPVPTPPSLPP 425
Score = 38.7 bits (86), Expect = 0.001
Identities = 39/168 (23%), Positives = 43/168 (25%), Gaps = 3/168 (1%)
Frame = +2
Query: 443 PXPPPP*KXXX---PXGPPPXXSPXXPPPXGXPXGGGPPPGXPXXGGXXXXTXPXGXXNX 613
P PPPP P P +P PPP P G PP P
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPG 397
Query: 614 PKXXXXGXXGXXXKXXAPPXGXGPLXXXSPPPXGAAXXKKGGXXPPXGGXXPGXPSPXXK 793
G + PP P S PP + P G P P
Sbjct: 398 RSAPALPPLGNASRTSTPPVPTPPSLPPSAPP---SLPPSAPPSLPMGA-PAAPPLPPSA 453
Query: 794 XXXPPXXXPXXNPPXXPPPXXXXXXPPXIXPLSXIPXXXVXXPPSXXG 937
PP P P P P PP P P + P G
Sbjct: 454 PIAPP--LPAGMPAAPPLPPAAPAPPPAPAPAPAAPVASIAELPQQDG 499
Score = 32.3 bits (70), Expect = 0.10
Identities = 32/139 (23%), Positives = 33/139 (23%), Gaps = 2/139 (1%)
Frame = +3
Query: 438 PXPXPPPXKK--XXXPXGPPPXXPQXXPPPXGXPXGXGPPPGAPXXGXXXXXPXPXGXXT 611
P P PPP P P PPP P PP P P
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP 396
Query: 612 XXKXXXXXXXGXXXXGXPPPXGXAPSXXXXPPXXGXRX*KKGEXPPPXGVXXRGXPLPSX 791
G PP PS PP P G PLP
Sbjct: 397 GRSAPALPPLGNASRTSTPPVPTPPS---LPPSAPPSLPPSAPPSLPMGA-PAAPPLPPS 452
Query: 792 NXXPPPXXSPXXTPPXXPP 848
PP + P PP
Sbjct: 453 APIAPPLPAGMPAAPPLPP 471
Score = 31.1 bits (67), Expect = 0.24
Identities = 17/49 (34%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
Frame = +3
Query: 423 LGXXGPXPXPPPXKKXXXPXGPPPXXPQXXPP--PXGXPXGXGPPPGAP 563
LG PP P PP P PP P G P PP AP
Sbjct: 406 LGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAP 454
Score = 29.5 bits (63), Expect = 0.73
Identities = 29/133 (21%), Positives = 31/133 (23%), Gaps = 1/133 (0%)
Frame = +3
Query: 438 PXPXPPPXKKXXXPXGPPPXXPQXXPPPXGXPXGXGPPPGAPXXGXXXXXPXPXGXXTXX 617
P P P PPP PP P P P P P
Sbjct: 241 PPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLP---PPSS 297
Query: 618 KXXXXXXXGXXXXGXPPPXGXAPSXXXXPPXXGXRX*KKGEXPPPXGVXXRG-XPLPSXN 794
+ PPP + P G PPP G PLP
Sbjct: 298 RVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQG 357
Query: 795 XXPPPXXSPXXTP 833
PP P P
Sbjct: 358 RSAPPPPPPRSAP 370
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 40.3 bits (90), Expect = 4e-04
Identities = 41/177 (23%), Positives = 44/177 (24%), Gaps = 14/177 (7%)
Frame = +2
Query: 437 PXPXPPPP*KXXX---PXGPPPXXSPXXPPPXGXPXGGGPPPGXPXXGGXXXXTXPXGXX 607
P P P P + P G PP +P PP P PP P P G
Sbjct: 1063 PPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVA-VPPVPAPSGAP 1121
Query: 608 NXPKXXXXGXXGXXXKXXAPPXGXGPLXXXSPPPXGAAXXKK-----------GGXXPPX 754
PK P P P GA K PP
Sbjct: 1122 PVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPV 1181
Query: 755 GGXXPGXPSPXXKXXXPPXXXPXXNPPXXPPPXXXXXXPPXIXPLSXIPXXXVXXPP 925
G P PP P P PPP P L +P PP
Sbjct: 1182 PKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPP 1238
Score = 38.7 bits (86), Expect = 0.001
Identities = 40/166 (24%), Positives = 43/166 (25%), Gaps = 3/166 (1%)
Frame = +2
Query: 437 PXPXPP-PP*KXXXPXGPPPXXSPXXPPPXGXPXGGGPPPGXPXXGGXXXXTXPXGXXNX 613
P PP P P PPP +P P P G PP P G P
Sbjct: 1046 PTSTPPVPKSSSGAPSAPPPVPAPSSEIP-SIPAPSGAPP-VPAPSGIPPVPKPSVAAPP 1103
Query: 614 PKXXXXGXXGXXXKXXAPPXGXGPLXXXS-PPPXGAAXXKKGG-XXPPXGGXXPGXPSPX 787
APP + P P GA K PP P P
Sbjct: 1104 VPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPK 1163
Query: 788 XKXXXPPXXXPXXNPPXXPPPXXXXXXPPXIXPLSXIPXXXVXXPP 925
PP P P P P P +P V PP
Sbjct: 1164 PSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPP 1209
Score = 38.7 bits (86), Expect = 0.001
Identities = 39/162 (24%), Positives = 40/162 (24%), Gaps = 2/162 (1%)
Frame = +2
Query: 449 PPPP*KXXXPXGPPPXXSPXXPPPXGXPXGGGPPPGXPXXGGXXXXTXPXGXXNXPKXXX 628
PP P P G PP P P G PP P P G PK
Sbjct: 1112 PPVP----APSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPA-PSGAPPVPKPSV 1166
Query: 629 XGXXGXXXKXXAPPXGXGPLXXXSPPPXGAAXX--KKGGXXPPXGGXXPGXPSPXXKXXX 802
PP PP A K PP P P
Sbjct: 1167 AAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGL 1226
Query: 803 PPXXXPXXNPPXXPPPXXXXXXPPXIXPLSXIPXXXVXXPPS 928
PP P P P P P P S +P PS
Sbjct: 1227 PPVPVPTAKAPPVPAP--SSEAPSVSTPRSSVPSPHSNASPS 1266
Score = 27.5 bits (58), Expect = 2.9
Identities = 21/87 (24%), Positives = 26/87 (29%)
Frame = +3
Query: 666 PPXGXAPSXXXXPPXXGXRX*KKGEXPPPXGVXXRGXPLPSXNXXPPPXXSPXXTPPXXP 845
PP PS P PP + + P+P + PP P PP
Sbjct: 986 PPKDHPPSAPLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPI 1045
Query: 846 PXXXXXXXXXKSPXSXXSXGXXSSXPP 926
P P S G S+ PP
Sbjct: 1046 P-------TSTPPVPKSSSGAPSAPPP 1065
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 33.5 bits (73), Expect = 0.045
Identities = 16/43 (37%), Positives = 16/43 (37%)
Frame = +2
Query: 443 PXPPPP*KXXXPXGPPPXXSPXXPPPXGXPXGGGPPPGXPXXG 571
P PPPP P P P P G P PPPG G
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAG 774
Score = 33.5 bits (73), Expect = 0.045
Identities = 18/53 (33%), Positives = 18/53 (33%)
Frame = +3
Query: 438 PXPXPPPXKKXXXPXGPPPXXPQXXPPPXGXPXGXGPPPGAPXXGXXXXXPXP 596
P P PPP GPPP P G P PPP G P P
Sbjct: 748 PIPVPPPAP---IMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797
Score = 33.1 bits (72), Expect = 0.059
Identities = 18/42 (42%), Positives = 18/42 (42%)
Frame = +2
Query: 437 PXPXPPPP*KXXXPXGPPPXXSPXXPPPXGXPXGGGPPPGXP 562
P P P PP GPPP PPP G G PPP P
Sbjct: 746 PAPIPVPP-PAPIMGGPPPP-----PPPPGVAGAGPPPPPPP 781
Score = 32.3 bits (70), Expect = 0.10
Identities = 17/50 (34%), Positives = 17/50 (34%), Gaps = 1/50 (2%)
Frame = +3
Query: 450 PPPXKKXXXPXGPPPXXPQXXPPPX-GXPXGXGPPPGAPXXGXXXXXPXP 596
PPP P P P P P G P PPPG G P P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 32.3 bits (70), Expect = 0.10
Identities = 16/40 (40%), Positives = 16/40 (40%)
Frame = +3
Query: 444 PXPPPXKKXXXPXGPPPXXPQXXPPPXGXPXGXGPPPGAP 563
P P P P P P PPP G G GPPP P
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGV-AGAGPPPPPP 780
Score = 30.3 bits (65), Expect = 0.42
Identities = 15/29 (51%), Positives = 15/29 (51%)
Frame = +2
Query: 434 GPXPXPPPP*KXXXPXGPPPXXSPXXPPP 520
GP P PPPP GPPP P PPP
Sbjct: 760 GPPPPPPPP--GVAGAGPPP---PPPPPP 783
Score = 27.9 bits (59), Expect = 2.2
Identities = 14/47 (29%), Positives = 15/47 (31%)
Frame = +2
Query: 746 PPXGGXXPGXPSPXXKXXXPPXXXPXXNPPXXPPPXXXXXXPPXIXP 886
PP P+P PP PP PPP PP P
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 27.1 bits (57), Expect = 3.9
Identities = 14/39 (35%), Positives = 15/39 (38%)
Frame = +3
Query: 732 KGEXPPPXGVXXRGXPLPSXNXXPPPXXSPXXTPPXXPP 848
K PPP V P P+ PPP PP PP
Sbjct: 730 KSPPPPPPAVIVP-TPAPAPIPVPPPAPIMGGPPPPPPP 767
Score = 25.8 bits (54), Expect = 9.0
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = +3
Query: 486 PPPXXPQXXPPPXGXPXGXGPPPGAPXXGXXXXXPXPXG 602
PPP P P P PP AP G P P G
Sbjct: 732 PPPPPPAVIVPTPA-PAPIPVPPPAPIMGGPPPPPPPPG 769
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 31.1 bits (67), Expect = 0.24
Identities = 19/55 (34%), Positives = 20/55 (36%), Gaps = 6/55 (10%)
Frame = +2
Query: 416 GGFGXXGPXPXPP------PP*KXXXPXGPPPXXSPXXPPPXGXPXGGGPPPGXP 562
GG P PP P + P PPP S PPP P GPP P
Sbjct: 1679 GGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMS-VPPPPSAPPMPAGPPSAPP 1732
Score = 30.7 bits (66), Expect = 0.31
Identities = 14/42 (33%), Positives = 14/42 (33%)
Frame = +2
Query: 437 PXPXPPPP*KXXXPXGPPPXXSPXXPPPXGXPXGGGPPPGXP 562
P P PPP P PP P PP P P P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
Score = 27.9 bits (59), Expect = 2.2
Identities = 16/45 (35%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Frame = +3
Query: 438 PXPXPPPXKKXXXPXGPP---PXXPQXXPPPXGXPXGXGPPPGAP 563
P PP P PP P P P P G P PPP P
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSA--PPPPLP 1736
Score = 27.1 bits (57), Expect = 3.9
Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Frame = +2
Query: 422 FGXXGPX-PXPPPP*KXXXPXGPPPXXSPXXPPPXGXPXGGGPPPGXP 562
FG P P PP + PP +P PPP P PPP P
Sbjct: 1678 FGGMAPAHPVSTPPVRPQSA-APPQMSAPTPPPP---PMSVPPPPSAP 1721
Score = 26.2 bits (55), Expect = 6.8
Identities = 13/49 (26%), Positives = 15/49 (30%)
Frame = +2
Query: 755 GGXXPGXPSPXXKXXXPPXXXPXXNPPXXPPPXXXXXXPPXIXPLSXIP 901
GG P P P + P PPP PP P+ P
Sbjct: 1679 GGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGP 1727
Score = 25.8 bits (54), Expect = 9.0
Identities = 12/48 (25%), Positives = 15/48 (31%)
Frame = +1
Query: 802 PPPSXPPXXPPPXXPPXXXXXXPXXNXPXLXXPXGXGXXPPLXXGGGP 945
P + PP P PP P + P + PPL P
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 30.3 bits (65), Expect = 0.42
Identities = 15/39 (38%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Frame = +2
Query: 449 PPPP*KXXXPXGPPPXXSPXXP-PPXGXPXGGGPPPGXP 562
PPPP P PP +P PP G P G G P
Sbjct: 1882 PPPPPPMALPKAGPPSAAPTSALPPAGPPAGATAISGNP 1920
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 29.5 bits (63), Expect = 0.73
Identities = 21/88 (23%), Positives = 22/88 (25%)
Frame = +3
Query: 444 PXPPPXKKXXXPXGPPPXXPQXXPPPXGXPXGXGPPPGAPXXGXXXXXPXPXGXXTXXKX 623
P P P P PP P PPP PP AP P
Sbjct: 150 PPPSPASAPPIPSKAPPI-PSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQ 208
Query: 624 XXXXXXGXXXXGXPPPXGXAPSXXXXPP 707
PP G AP+ P
Sbjct: 209 APVANTSSRPSSFAPPAGHAPNVTSESP 236
Score = 27.5 bits (58), Expect = 2.9
Identities = 33/152 (21%), Positives = 38/152 (25%), Gaps = 4/152 (2%)
Frame = +2
Query: 485 PPPXXSPXXPPPXGXPXGGGPPPGXPXXGGXXXXTXPX----GXXNXPKXXXXGXXGXXX 652
P P +P P P P GG P G +
Sbjct: 74 PVPTGAPSLPTSSNNTQQAEERPSMPALGGLFAGGMPKLRHIGKSSASAAPPSAPAPPTP 133
Query: 653 KXXAPPXGXGPLXXXSPPPXGAAXXKKGGXXPPXGGXXPGXPSPXXKXXXPPXXXPXXNP 832
+ P P PPP A+ PP P P PP +
Sbjct: 134 QSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPP---SAPSL 190
Query: 833 PXXPPPXXXXXXPPXIXPLSXIPXXXVXXPPS 928
P PP PP PLS P PS
Sbjct: 191 PSAVPPMPPKVPPP---PLSQAPVANTSSRPS 219
Score = 27.1 bits (57), Expect = 3.9
Identities = 27/126 (21%), Positives = 30/126 (23%), Gaps = 5/126 (3%)
Frame = +2
Query: 485 PPPXXSPXXPPPXGXPXGGGPPPGXPXXGGXXXXTXPXGXXNXPKXXXXGXXGXXXKXXA 664
PP S PP P PPP P P +
Sbjct: 130 PPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPS 189
Query: 665 PPXGXGPL-XXXSPPPXGAAXXKKGGXXP----PXGGXXPGXPSPXXKXXXPPXXXPXXN 829
P P+ PPP A P P G P S K P +
Sbjct: 190 LPSAVPPMPPKVPPPPLSQAPVANTSSRPSSFAPPAGHAPNVTSESPKFPNRGPSIPSAS 249
Query: 830 PPXXPP 847
P PP
Sbjct: 250 VPPVPP 255
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 29.1 bits (62), Expect = 0.96
Identities = 21/42 (50%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = -2
Query: 561 GXPGG-GPPPXGXPXGGGXXGXXXGGGPXGXXXFXGG-GGXG 442
G PGG G P G GGG G GGGP G GG GG G
Sbjct: 235 GGPGGFGGGPGGF--GGGLGGF--GGGPGGFGGGPGGHGGPG 272
Score = 28.7 bits (61), Expect = 1.3
Identities = 18/43 (41%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Frame = -2
Query: 561 GXPGGGPPPX-GXPXGGGXXGXXXGGGPXGXXXFXGGGGXGXG 436
G GGGP G P G G GGG G GG G G G
Sbjct: 224 GGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPG 266
Score = 28.3 bits (60), Expect = 1.7
Identities = 20/56 (35%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Frame = -1
Query: 601 PXGXGXXXXXPXXGAPGGGPXPXGXPXGGGXXW-GXXGGGPXGXXXFLXGGGXGXG 437
P G G G GG G GG G GGGP G L G G G G
Sbjct: 204 PGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPG 259
Score = 27.5 bits (58), Expect = 2.9
Identities = 20/52 (38%), Positives = 20/52 (38%), Gaps = 10/52 (19%)
Frame = -2
Query: 561 GXPGGGPPPXGXPXGG-GXXG---------XXXGGGPXGXXXFXGGGGXGXG 436
G GGPPP GG G G GGGP G GG G G G
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPG 245
Score = 27.5 bits (58), Expect = 2.9
Identities = 17/41 (41%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = -3
Query: 923 GGXXPXPXGXXRXGXFXXGXXXXXXGGXXG-GGXXGGXXGG 804
GG P P G G F G GG G GG GG GG
Sbjct: 198 GGPPPGPGGFGGFGGF--GGEGHHHGGHGGFGGGPGGFEGG 236
Score = 26.6 bits (56), Expect = 5.1
Identities = 17/44 (38%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Frame = -1
Query: 562 GAPGGGPX-PXGXPXGGGXXWGXXGGGPXGXXXFLXGGGXGXGP 434
G PGG P G G G G GG G F G G GP
Sbjct: 228 GGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGGP 271
Score = 22.6 bits (46), Expect(2) = 4.3
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = +2
Query: 374 GXLXWXXPXGGGVXGGFGXXGPXPXPPP 457
G L GG GGFG P P P
Sbjct: 177 GNLFHHRGHNGGGFGGFGGGSGGPPPGP 204
Score = 22.6 bits (46), Expect(2) = 4.3
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +2
Query: 539 GGPPPGXPXXGG 574
GGPPPG GG
Sbjct: 198 GGPPPGPGGFGG 209
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 28.3 bits (60), Expect = 1.7
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +2
Query: 488 PPXXSPXXPPPXGXPXGGGPPPGXP 562
PP P PPP G PPP P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPP 29
Score = 27.5 bits (58), Expect = 2.9
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +3
Query: 486 PPPXXPQXXPPPXGXPXGXGPPPGAP 563
PP P PPP P PPP P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 27.5 bits (58), Expect = 2.9
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = +2
Query: 434 GPXPXPPPP*KXXXPXGPPPXXSPXXPPPXG 526
G P PPPP P PPP PPP G
Sbjct: 7 GNPPPPPPPPGFEPPSQPPP------PPPPG 31
Score = 26.6 bits (56), Expect = 5.1
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +1
Query: 802 PPPSXPPXXPPPXXPP 849
PPP PP PP PP
Sbjct: 10 PPPPPPPGFEPPSQPP 25
Score = 25.8 bits (54), Expect = 9.0
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +1
Query: 802 PPPSXPPXXPPPXXPP 849
PP PP PPP PP
Sbjct: 15 PPGFEPPSQPPPPPPP 30
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 26.2 bits (55), Expect = 6.8
Identities = 14/39 (35%), Positives = 15/39 (38%)
Frame = -1
Query: 847 GGXXGGVXXGXXXGGGXXFXXGRGXPRXXTPXGGGXSPF 731
GG G G G G GRG R P G +PF
Sbjct: 454 GGFGGRGGFGGRGGFGGGRGRGRGGARSGNPNRGSVAPF 492
>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 25.8 bits (54), Expect = 9.0
Identities = 14/32 (43%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Frame = -2
Query: 555 PGGGPPPXGXPXGG-GXXGXXXGGGPXGXXXF 463
PGGG P G P G G GGG G F
Sbjct: 442 PGGGFPGGGFPGGSYNSQGFGMGGGFPGFTSF 473
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 25.8 bits (54), Expect = 9.0
Identities = 15/36 (41%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Frame = -2
Query: 543 PPPXGXPXG-GGXXGXXXGGGPXGXXXF-XGGGGXG 442
PPP G G G G G GP G F GG G
Sbjct: 76 PPPPGAEGGPGAGFGGFPGAGPGGARTFHFNMGGPG 111
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.154 0.543
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,212,665
Number of Sequences: 5004
Number of extensions: 40246
Number of successful extensions: 367
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 485316198
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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