Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_A02
         (952 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       32   0.009

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 31.9 bits (69), Expect = 0.009
 Identities = 15/39 (38%), Positives = 16/39 (41%)
 Frame = +3

Query: 438 PXPXPPPXKKXXXPXGPPPXXPQXXPPPXGXPXGXGPPP 554
           P P P P +    P    P  P   PPP G P   G PP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPP---GAPP 56



 Score = 27.1 bits (57), Expect = 0.25
 Identities = 15/46 (32%), Positives = 15/46 (32%)
 Frame = +2

Query: 749 PXGGXXPGXPSPXXKXXXPPXXXPXXNPPXXPPPXXXXXXPPXIXP 886
           P  G     PSP      P    P  NP   PPP      PP   P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPP-NPSQGPPPGGPPGAPPSQNP 60



 Score = 24.2 bits (50), Expect = 1.8
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +3

Query: 492 PXXPQXXPPPXGXPXGXGPPPGAP 563
           P  PQ   PP       GPPPG P
Sbjct: 31  PQAPQRGSPPN---PSQGPPPGGP 51



 Score = 24.2 bits (50), Expect(2) = 0.068
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +1

Query: 802 PPPSXPPXXPPPXXP 846
           PPP  PP  PP   P
Sbjct: 46  PPPGGPPGAPPSQNP 60



 Score = 23.0 bits (47), Expect(2) = 0.068
 Identities = 10/29 (34%), Positives = 11/29 (37%)
 Frame = +1

Query: 631 GXXGGPNXXGXPPXGGXPPXXXXXPPXGG 717
           G    P+     P  G PP     PP GG
Sbjct: 22  GPQPSPHQSPQAPQRGSPPNPSQGPPPGG 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.314    0.154    0.543 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,914
Number of Sequences: 438
Number of extensions: 11008
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31202262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)