Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_P22
         (1240 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    23   4.7  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    23   6.2  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    22   8.2  

>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 23.0 bits (47), Expect = 4.7
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = -1

Query: 73  GTCDRSYGXEREW 35
           GTC   YG E  W
Sbjct: 371 GTCGNGYGCEHRW 383


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 6.2
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = +2

Query: 275 VWKWQCKVEGEEVDRRRHGWSVNDD 349
           +W WQC  + E   R     S N D
Sbjct: 29  IWYWQCNTDEETCTRISSTVSRNTD 53


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 22.2 bits (45), Expect = 8.2
 Identities = 10/47 (21%), Positives = 20/47 (42%)
 Frame = +1

Query: 268 RRCMEMAVQGRGGRGRPKKTWMECE*RYGRERSKQITMAECSAVLRP 408
           R+C+ + +   G R   +  W +       ++     MA  + +LRP
Sbjct: 64  RKCLLVGMSKSGSRYGRRSNWFKIHCLLQEQQQAGANMAAAANLLRP 110


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 278,511
Number of Sequences: 336
Number of extensions: 6440
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 59
effective length of database: 102,761
effective search space used: 36274633
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)