Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_P22
(1240 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch... 30 0.58
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos... 29 1.8
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei... 28 3.1
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 28 3.1
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom... 27 4.1
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1... 27 5.4
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 27 7.1
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |... 26 9.4
SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces po... 26 9.4
>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 794
Score = 30.3 bits (65), Expect = 0.58
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +1
Query: 649 SIEIPGSNEPNKTVVISYDICAYGKSPGHSEVTFNVTPPGFVNLDTVY 792
S+ I G + + +++ SY + Y + TF +P GFVN VY
Sbjct: 197 SLSIDGDDSFHPSLIESYQVGGYDGVSIPTPATFGGSPSGFVNAPLVY 244
>SPBC8D2.01 |gsk31||serine/threonine protein kinase
Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 381
Score = 28.7 bits (61), Expect = 1.8
Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 777 LRHSIPTYNRHALQR-NKHNIVHNGLDILRGLVSFVLPSNIHKLQ 908
+ HS+P H L+ HN N +D+L ++++V I ++
Sbjct: 258 VNHSLPNVRPHTLESVMPHNCTKNAMDLLHKMLTYVPSKRISAIE 302
>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 968
Score = 27.9 bits (59), Expect = 3.1
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 795 TYNRHALQRNKHNIVHNGLDILRGLVSFVLPSNIHKLQ 908
+Y H L R +H+I+ N L+ + FV +N +Q
Sbjct: 539 SYGNHVLNRIQHDILENHFCCLKNVKDFVCGANTISMQ 576
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 27.9 bits (59), Expect = 3.1
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Frame = +3
Query: 702 RYMRVRKES-GTFGSDVQCY---TARFCQLR--HSIPTYNRHAL 815
RY VR GTFG +QCY T R C ++ +IP Y +L
Sbjct: 361 RYTVVRLLGHGTFGKVIQCYDQSTGRHCAIKVTRAIPKYREASL 404
>SPAC1296.03c |sxa2||serine carboxypeptidase
Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 27.5 bits (58), Expect = 4.1
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 845 WVGYTSRPGQFRSTLKYT*TSRGKAWSXSTSI 940
W G+T PG +T +T R A++ S S+
Sbjct: 454 WQGFTQSPGSLETTNGFTLDERNLAFTLSNSV 485
>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
Prw1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 431
Score = 27.1 bits (57), Expect = 5.4
Identities = 12/50 (24%), Positives = 21/50 (42%)
Frame = -2
Query: 387 FRHRDLFTPLSPISSFTLHPCLLRSTSSPSTLHCHFHTSPCHMHLFSAHH 238
++H+DL +S +H S+ H H+ P H F+ H+
Sbjct: 244 YKHQDLLASVSYDQYLHVHDIRRPDASTKPARSVHAHSGPIHSVAFNPHN 293
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 26.6 bits (56), Expect = 7.1
Identities = 21/82 (25%), Positives = 32/82 (39%)
Frame = +1
Query: 466 IILGIPSAHSQLDKMYVEVTDLNLLVEETRLLKLVQIGQYNTSLEVISNIQHPDIVQLVP 645
+ILGIPS +Y + ++ E T + K S ++N P +
Sbjct: 792 LILGIPSLQLVRPDIYDSIREMIASNENTEVEK-----DKLDSFSALANPASPKAPEYTF 846
Query: 646 PSIEIPGSNEPNKTVVISYDIC 711
SI +P N PN I +C
Sbjct: 847 VSIHVPPLNVPNAEGEIEESVC 868
>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 652
Score = 26.2 bits (55), Expect = 9.4
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 183 KNVPLVHKTQIHYLIKDTICYYKNLICNTNKL 88
+ V L HK I I +T +Y +ICN ++L
Sbjct: 435 QKVDLFHKKYIIVPINETFHWYLAIICNIDRL 466
>SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 432
Score = 26.2 bits (55), Expect = 9.4
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +1
Query: 526 DLNLLVEETRLLKLVQIGQYNTSLEVISNIQH 621
DLNL V +L LVQ GQ L I + H
Sbjct: 358 DLNLQVYHEKLRNLVQQGQAAECLNTIKRMSH 389
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,696,490
Number of Sequences: 5004
Number of extensions: 98051
Number of successful extensions: 261
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 673357516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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