Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_P22
(1240 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_1021 - 10419383-10419529,10419684-10419733,10419821-104199... 65 9e-11
03_04_0174 - 18044516-18046327 32 1.1
12_02_0855 + 23703827-23704019,23704465-23704481,23705051-237052... 30 3.3
07_03_1772 + 29411874-29413218,29413355-29413421,29413749-294138... 30 4.3
06_03_0587 + 22555414-22557231 29 5.7
03_02_0462 + 8669049-8669136,8669922-8670046,8670227-8670437,867... 29 5.7
01_01_0857 - 6693460-6693991,6695086-6695165,6695508-6697448 29 5.7
10_08_0176 + 15432092-15432470,15432592-15432688,15432801-154329... 29 10.0
01_06_0880 + 32687018-32687060,32687142-32687219,32687323-326875... 29 10.0
01_01_1149 - 9134390-9134600,9134732-9134790,9135650-9135724,913... 29 10.0
>12_01_1021 -
10419383-10419529,10419684-10419733,10419821-10419938,
10420498-10420540,10420674-10420825,10420876-10420965,
10422881-10423013,10424397-10424515
Length = 283
Score = 65.3 bits (152), Expect = 9e-11
Identities = 25/45 (55%), Positives = 35/45 (77%)
Frame = +1
Query: 823 INIISYIMGWIYFAAWSVSFYPQIYINFKRKSVVXLNFXFWPLNI 957
+ ++ ++GW+ F AWS SFYPQ+++NFKRKSVV LNF F LN+
Sbjct: 9 MEVLYQVLGWVAFFAWSFSFYPQVFLNFKRKSVVGLNFDFLVLNL 53
>03_04_0174 - 18044516-18046327
Length = 603
Score = 31.9 bits (69), Expect = 1.1
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = -2
Query: 381 HRDLFTPLSPISSFTLHPCLLRSTSSPSTLHCHFHTSPCHMH 256
H+ +P P +P STSSPS+ H H HT H H
Sbjct: 16 HQHAASPSPPDQPHKSYPSSRGSTSSPSSHHTHNHTYYHHSH 57
>12_02_0855 +
23703827-23704019,23704465-23704481,23705051-23705254,
23705486-23705605,23705867-23706472
Length = 379
Score = 30.3 bits (65), Expect = 3.3
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = -3
Query: 536 RFRSVTSTYILSNWECALGIPKIIITTKQKRIL*LEIEHAAARGLNTALHS 384
R S T T L +C LG+ +++ + + +EI H+ A GLN L++
Sbjct: 235 RSTSFTETVRLYGEKCGLGVKFLLLVNAVQATVDVEIIHSRACGLNLKLYA 285
>07_03_1772 +
29411874-29413218,29413355-29413421,29413749-29413896,
29415293-29415416,29416340-29416590,29416923-29418449,
29418786-29418896,29419576-29419734,29419827-29421734
Length = 1879
Score = 29.9 bits (64), Expect = 4.3
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 355 RERSKQITMAECSAVLRPRAAACSISSH 438
R RS++ T ++CS VL+P C SSH
Sbjct: 605 RLRSRRATCSDCSNVLKPGVDVCVQSSH 632
>06_03_0587 + 22555414-22557231
Length = 605
Score = 29.5 bits (63), Expect = 5.7
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +3
Query: 729 GTFGSDVQCYTARFCQ--LRHSIPTYNRHALQRNKHNIVHNGL 851
GT G+ VQ R + L SIP RH Q K N+ HN L
Sbjct: 556 GTIGNLVQLNELRLDENNLSGSIPASIRHCTQLTKLNLAHNSL 598
>03_02_0462 +
8669049-8669136,8669922-8670046,8670227-8670437,
8670515-8670752,8671004-8671154,8671353-8671718
Length = 392
Score = 29.5 bits (63), Expect = 5.7
Identities = 10/26 (38%), Positives = 20/26 (76%)
Frame = +1
Query: 580 QYNTSLEVISNIQHPDIVQLVPPSIE 657
++ T + VISN++HP++V+L+ +E
Sbjct: 95 EFLTEINVISNVRHPNLVKLIGCCVE 120
>01_01_0857 - 6693460-6693991,6695086-6695165,6695508-6697448
Length = 850
Score = 29.5 bits (63), Expect = 5.7
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -2
Query: 378 RDLFTPLSPISSFTLHPCLLRSTSSPSTLHCHFHT 274
R F+ LSPI SF+L P L + +P + H H T
Sbjct: 61 RLFFSSLSPILSFSLLPGPLPAAPAPLSFHLHGET 95
>10_08_0176 +
15432092-15432470,15432592-15432688,15432801-15432985,
15433012-15433056,15433447-15433472,15435299-15435434,
15435608-15435702
Length = 320
Score = 28.7 bits (61), Expect = 10.0
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 708 MRVRKESGTFGSDVQCYTARFCQLRHSIPTY 800
M+++ SG FG DV+ Y C + + P Y
Sbjct: 217 MKLKVSSGEFGLDVEDYLTGLCFMSNDFPRY 247
>01_06_0880 +
32687018-32687060,32687142-32687219,32687323-32687532,
32687868-32689744
Length = 735
Score = 28.7 bits (61), Expect = 10.0
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +1
Query: 544 EETRLLKLVQIGQYNTSLEVISNIQHPDIVQLVP 645
EET LLK+V+ NTS SN QH +V+ +P
Sbjct: 606 EETPLLKMVE----NTSSFSFSNEQHSKVVECIP 635
>01_01_1149 -
9134390-9134600,9134732-9134790,9135650-9135724,
9135815-9135934,9136012-9136183,9136277-9136335,
9136516-9136572,9136900-9136998,9137088-9137114,
9137607-9137649,9137779-9138023
Length = 388
Score = 28.7 bits (61), Expect = 10.0
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 844 MGWIYFAAWSVSFYPQIYINFKRKSVVXLNFXF 942
+G + +W V+ PQI N+K KS L+ F
Sbjct: 43 LGLLSVISWGVAEVPQIITNYKHKSTEGLSLAF 75
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,836,307
Number of Sequences: 37544
Number of extensions: 661895
Number of successful extensions: 1647
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1646
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3817805856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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