Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_P21
(1315 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe... 134 3e-32
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 43 8e-05
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 38 0.002
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 33 0.12
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 1.4
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 2.5
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 4.3
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 25 4.4
>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
pombe|chr mitochondrial|||Manual
Length = 248
Score = 134 bits (323), Expect = 3e-32
Identities = 65/149 (43%), Positives = 90/149 (60%), Gaps = 5/149 (3%)
Frame = +2
Query: 242 PAFTLIXXAXPSXRLXYLLDELNNPLITLKSIGHQ*Y*RYEYSDF-----NNIEFDSYII 406
PA LI A PS +L YLLDE+ P +T+K+IG Q + YE +DF + FDSY++
Sbjct: 85 PALILILVALPSFKLLYLLDEVQKPSMTVKAIGRQWFWSYELNDFVTNENEPVSFDSYMV 144
Query: 407 PSNEIKNNEFRLLDVDXXXXXXXXXXXXXXXTATDVIHS*TIPSLGVKVDANPGRLNQTN 586
P +++ R L+VD T+ DVIHS +PSLG+K D P RLNQ +
Sbjct: 145 PEEDLEEGSLRQLEVDNRLVLPIDTRIRLILTSGDVIHSWAVPSLGIKCDCIPSRLNQVS 204
Query: 587 FFINRPGIFFGQCSEICGANHSFIPIVIE 673
I+R G+F+GQCSE+CG HS +PIV++
Sbjct: 205 LSIDREGLFYGQCSELCGVLHSSMPIVVQ 233
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 43.2 bits (97), Expect = 8e-05
Identities = 27/78 (34%), Positives = 28/78 (35%), Gaps = 3/78 (3%)
Frame = -2
Query: 1272 KXPPPPPXXGXXP-XXPXXXXFXPGXPPGXGXXXXPPPXG--GXXPPPPPPXXXGPXGXX 1102
K PPPPP P P P P G PPP G G PPPPPP P
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP---PPAVS 786
Query: 1101 XXGXXXXGPXXPXPPXPR 1048
G P P P+
Sbjct: 787 AGGSRYYAPAPQAEPEPK 804
Score = 42.3 bits (95), Expect = 1e-04
Identities = 22/53 (41%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Frame = -1
Query: 1267 PPPPXXXRXXPXXAPXPXVFXXXXPRXGGXPXXPPXGG--GXXPXPPPXXPGA 1115
PPPP P AP P P GG P PP G G P PPP P A
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPA 784
Score = 27.1 bits (57), Expect = 5.7
Identities = 16/62 (25%), Positives = 16/62 (25%)
Frame = -1
Query: 1315 PXPXFXXXPGXGPXXXPPPPXXXRXXPXXAPXPXVFXXXXPRXGGXPXXPPXGGGXXPXP 1136
P P P PPP P P P V P P GG P
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAP 795
Query: 1135 PP 1130
P
Sbjct: 796 AP 797
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 38.3 bits (85), Expect = 0.002
Identities = 23/72 (31%), Positives = 23/72 (31%), Gaps = 1/72 (1%)
Frame = -2
Query: 1263 PPPPXXGXXPXXPXXXXFXPGXP-PGXGXXXXPPPXGGXXPPPPPPXXXGPXGXXXXGXX 1087
PP P P P P P P G P P G PP PPP P G
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGV-PPVPPPSEAPPVPKPSVGVP 1208
Query: 1086 XXGPXXPXPPXP 1051
P PP P
Sbjct: 1209 PVPPPSTAPPVP 1220
Score = 33.5 bits (73), Expect = 0.066
Identities = 19/72 (26%), Positives = 20/72 (27%)
Frame = -2
Query: 1263 PPPPXXGXXPXXPXXXXFXPGXPPGXGXXXXPPPXGGXXPPPPPPXXXGPXGXXXXGXXX 1084
PP P P P P P G P P P P P P G
Sbjct: 1131 PPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPP 1190
Query: 1083 XGPXXPXPPXPR 1048
P PP P+
Sbjct: 1191 VPPPSEAPPVPK 1202
Score = 30.7 bits (66), Expect = 0.47
Identities = 15/45 (33%), Positives = 15/45 (33%)
Frame = -2
Query: 1266 PPPPPXXGXXPXXPXXXXFXPGXPPGXGXXXXPPPXGGXXPPPPP 1132
PP P P P P PP P P G P PPP
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPP 1213
Score = 29.9 bits (64), Expect = 0.82
Identities = 18/72 (25%), Positives = 18/72 (25%)
Frame = -2
Query: 1266 PPPPPXXGXXPXXPXXXXFXPGXPPGXGXXXXPPPXGGXXPPPPPPXXXGPXGXXXXGXX 1087
PP P P P P P P P G P P P P
Sbjct: 1140 PPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPP 1199
Query: 1086 XXGPXXPXPPXP 1051
P PP P
Sbjct: 1200 VPKPSVGVPPVP 1211
Score = 29.9 bits (64), Expect = 0.82
Identities = 19/56 (33%), Positives = 19/56 (33%)
Frame = -2
Query: 1281 AXGKXPPPPPXXGXXPXXPXXXXFXPGXPPGXGXXXXPPPXGGXXPPPPPPXXXGP 1114
A G P PPP P P P PP P P G PP P P P
Sbjct: 1185 AAGVPPVPPPSEA--PPVPKPSVGVPPVPPPSTAPPVPTPSAG-LPPVPVPTAKAP 1237
Score = 29.5 bits (63), Expect = 1.1
Identities = 22/77 (28%), Positives = 22/77 (28%), Gaps = 2/77 (2%)
Frame = -2
Query: 1263 PPPPXXGXXPXXPXXXXFXPGXP-PGXGXXXXPPPXGGXXPPPPPPXXXGPXGXXXXG-X 1090
PP P P P P P P P P G PP P P P G
Sbjct: 1083 PPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGA--PPVPKPSVAAPPVPVPSGAP 1140
Query: 1089 XXXGPXXPXPPXPRGGG 1039
P PP P G
Sbjct: 1141 PVPKPSVAAPPVPAPSG 1157
Score = 28.7 bits (61), Expect = 1.9
Identities = 19/75 (25%), Positives = 19/75 (25%)
Frame = -2
Query: 1275 GKXPPPPPXXGXXPXXPXXXXFXPGXPPGXGXXXXPPPXGGXXPPPPPPXXXGPXGXXXX 1096
G P P P P P P G PPP P P P P
Sbjct: 1157 GAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPP-SEAPPVPKPSVGVPPVPPPST 1215
Query: 1095 GXXXXGPXXPXPPXP 1051
P PP P
Sbjct: 1216 APPVPTPSAGLPPVP 1230
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 32.7 bits (71), Expect = 0.12
Identities = 18/51 (35%), Positives = 18/51 (35%)
Frame = +1
Query: 1132 GGGXGXXPPPXGGXXXXPXXGGXPXXKXXXXGPXGAXXXXGXGGGGFXXGP 1284
GGG G PP GG GG G G G GGF GP
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGP 244
Score = 30.7 bits (66), Expect = 0.47
Identities = 18/54 (33%), Positives = 18/54 (33%)
Frame = +3
Query: 1122 GXXGGGXGXXPPPXGGXXGXPPXRGXXXXKTXGXGAXXGXXRXXXGGGGXXXGP 1283
G GGG G PP GG G G G G G GG GP
Sbjct: 191 GGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGP 244
Score = 27.1 bits (57), Expect = 5.7
Identities = 18/53 (33%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Frame = +2
Query: 1115 GPXXXGGGGGGXXPPXGGGXXXXPXPGGXPGKNXXXXGXXGXXP--XXGGGGG 1267
G G GGG PP G G G G + G G P GG GG
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGG 239
Score = 26.6 bits (56), Expect = 7.6
Identities = 17/46 (36%), Positives = 17/46 (36%)
Frame = +2
Query: 1130 GGGGGGXXPPXGGGXXXXPXPGGXPGKNXXXXGXXGXXPXXGGGGG 1267
G GGG GG P PGG G G G GG GG
Sbjct: 184 GHNGGGFGGFGGGSGGPPPGPGGFGG----FGGFGGEGHHHGGHGG 225
Score = 26.6 bits (56), Expect = 7.6
Identities = 16/44 (36%), Positives = 16/44 (36%)
Frame = +2
Query: 1133 GGGGGXXPPXGGGXXXXPXPGGXPGKNXXXXGXXGXXPXXGGGG 1264
GG GG GG GG PG G G P GGG
Sbjct: 221 GGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGG 264
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.1 bits (62), Expect = 1.4
Identities = 22/61 (36%), Positives = 22/61 (36%), Gaps = 10/61 (16%)
Frame = -2
Query: 1281 AXGKXPPPPPXX-----GXXPXX--PXXXXFXPGXPP--GXGXXXXP-PPXGGXXPPPPP 1132
A K PPPPP G P P PP P PP G PPPPP
Sbjct: 306 ANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPP 365
Query: 1131 P 1129
P
Sbjct: 366 P 366
Score = 28.7 bits (61), Expect = 1.9
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = -2
Query: 1146 PPPPPPXXXGPXGXXXXGXXXXGPXXPXPPXP 1051
PPPPPP G G P PP P
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPP 342
Score = 27.1 bits (57), Expect = 5.7
Identities = 19/67 (28%), Positives = 19/67 (28%), Gaps = 5/67 (7%)
Frame = -1
Query: 1315 PXPXFXXXPGXGPXXXPP--PPXXXRXXPXXAPXPXVFXXXXPRXGGXPXXPPX---GGG 1151
P P P P PP PP P P P P G P PP
Sbjct: 416 PVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPA 475
Query: 1150 XXPXPPP 1130
P P P
Sbjct: 476 PPPAPAP 482
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.3 bits (60), Expect = 2.5
Identities = 16/54 (29%), Positives = 16/54 (29%)
Frame = -2
Query: 1197 PPGXGXXXXPPPXGGXXPPPPPPXXXGPXGXXXXGXXXXGPXXPXPPXPRGGGP 1036
PP PP P PPPP P P P PP P P
Sbjct: 1690 PPVRPQSAAPPQMSA--PTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.5 bits (58), Expect = 4.3
Identities = 15/32 (46%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Frame = -2
Query: 1206 PGXPPGXGXXXXPPPXGGXXPP--PPPPXXXG 1117
PG PP PPP G PP PPPP G
Sbjct: 6 PGNPP------PPPPPPGFEPPSQPPPPPPPG 31
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 25.0 bits (52), Expect(2) = 4.4
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -2
Query: 1158 GGXXPPPPPP 1129
GG PPPPPP
Sbjct: 303 GGLPPPPPPP 312
Score = 20.6 bits (41), Expect(2) = 4.4
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -2
Query: 1281 AXGKXPPPPP 1252
A G PPPPP
Sbjct: 301 ANGGLPPPPP 310
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,354,571
Number of Sequences: 5004
Number of extensions: 55753
Number of successful extensions: 277
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 719358436
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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