Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_P20
         (1288 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    31   0.34 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   4.2  
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    27   4.2  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    27   5.6  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   5.6  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   5.6  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   9.8  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    26   9.8  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 273

 Score = 31.1 bits (67), Expect = 0.34
 Identities = 23/78 (29%), Positives = 23/78 (29%), Gaps = 3/78 (3%)
 Frame = +3

Query: 981  GGXPXGPXPXXXXXXSXXXXGGXPX---GXXKSXGXPGKXPXGPXVRPGXXXXXXXXXXG 1151
            GG   GP P           GG      G     G PG    GP    G          G
Sbjct: 194  GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGG 253

Query: 1152 XGGXPXPXGGXXXGXGPP 1205
             GG P   GG   G G P
Sbjct: 254  FGGGPGGFGGGPGGHGGP 271


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 309

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 12/38 (31%), Positives = 12/38 (31%)
 Frame = -1

Query: 1261 PXXXPKXPRXXXGFXPPPXGGPXPXXXPPXGXGXPPXP 1148
            P   P  P       PP    P P   PP     PP P
Sbjct: 124  PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIP 161


>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
 Frame = +3

Query: 90  LNMFET--ECSKLKRQLEELTAILVKLSEDEXXSSCLQKHSKNIEIEQIMKL---LTNLN 254
           L++FE   + S L+   +++  +   ++      S   KHSKN+  E+++ L     +L 
Sbjct: 318 LSIFERLRKDSSLQLTTKDINTLFSTIALSPTKLSMASKHSKNLVSERMLYLSLMYKSLV 377

Query: 255 NNSLIDPMKKSIDFKDFYPCSC 320
           +   ID     + F  F  CSC
Sbjct: 378 DLKTIDSFSLKLLFLKFMICSC 399


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = +3

Query: 102 ETECSKLKRQLEELTAILVKLSEDEXXSSCLQKHSKNIEIE 224
           +++  +L+ QLE LTA+  KLS  E  SS    +SK I  E
Sbjct: 453 DSDVEELREQLENLTALTKKLS--ERLSSSTFDNSKFIRTE 491


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 23/90 (25%), Positives = 27/90 (30%)
 Frame = -2

Query: 996  PMXNPPXPALXXFXPFXXLXSXXXPXYPPXXXKPXXPXWXX*NPSPXPNDRAXXVXERGX 817
            P+   P   L    P   L S   P   P    P  P      P P P      V +   
Sbjct: 999  PVSTSPAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTS-TPPVPKSSS 1057

Query: 816  GXAPHTXTPSPRAXADSXXQXKPPXPPPXP 727
            G AP    P P   ++      P   PP P
Sbjct: 1058 G-APSAPPPVPAPSSEIPSIPAPSGAPPVP 1086


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 14/28 (50%), Positives = 14/28 (50%), Gaps = 5/28 (17%)
 Frame = -1

Query: 1216 PPPX---GGPXPXXXPP--XGXGXPPXP 1148
            PPP    GGP P   PP   G G PP P
Sbjct: 752  PPPAPIMGGPPPPPPPPGVAGAGPPPPP 779


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 17/65 (26%), Positives = 17/65 (26%), Gaps = 2/65 (3%)
 Frame = -1

Query: 1270 PGXPXXXPKXPRXXXGFXPP--PXGGPXPXXXPPXGXGXPPXPXXKXXXXXXXPGRTXGP 1097
            P  P   P  P       PP  P G P     PP     PP P          P     P
Sbjct: 418  PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPP 477

Query: 1096 XGXFP 1082
                P
Sbjct: 478  PAPAP 482


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
 Frame = +3

Query: 69  DEERSIQ---LNMFETECSKLKRQLEELTAILVKLSEDEXXSSCLQKHSKNIEIEQIMKL 239
           DE+ ++Q   LN+ + E   ++ +LE L +  ++L      S    K+SK I    + KL
Sbjct: 800 DEKSTLQQKCLNL-QYEYENVRIELENLQSRALELESALEQSVSDAKYSKAIMQSGLSKL 858

Query: 240 LTNLNNN 260
           L+++N N
Sbjct: 859 LSSINEN 865


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,390,164
Number of Sequences: 5004
Number of extensions: 53585
Number of successful extensions: 115
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 701473834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)