Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_P18
         (1279 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   322   5e-89
SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit S5|S...    29   1.0  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    29   1.4  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  322 bits (792), Expect = 5e-89
 Identities = 141/216 (65%), Positives = 179/216 (82%)
 Frame = +3

Query: 171 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 350
           ++++KEWVPVTKLGRLV+ GKI  +E IYL+SLPIKE++I+D+FL P LNDEV+K++PVQ
Sbjct: 28  RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKEYQIVDYFL-PRLNDEVMKVVPVQ 86

Query: 351 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNK 530
           KQTRAGQRTRFKAFV IGD++GH+GLG+KC+KEVATAIRGAII+ KLS++P+RRGYWG  
Sbjct: 87  KQTRAGQRTRFKAFVVIGDSDGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWGTA 146

Query: 531 IGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTL 710
           +G PHTVP KV+GKCGSVTVRL+PAPRG G+V+APV K+ LQ+AG++DCYT +RGST TL
Sbjct: 147 LGDPHTVPVKVSGKCGSVTVRLVPAPRGAGLVAAPVTKRFLQLAGIEDCYTQSRGSTKTL 206

Query: 711 GNFXXXXXXXXXXXXXXLTPDLWRDIPLTKSPYSEF 818
           GNF              LTP+LW + P  ++P  E+
Sbjct: 207 GNFVKAAFAAASLTYGILTPNLWAERPFGQTPIEEY 242


>SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 28/118 (23%), Positives = 50/118 (42%)
 Frame = +3

Query: 345 VQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWG 524
           V  QTR G+         +G+ NG  G G   ++  + A + +   A  +++ + R Y  
Sbjct: 235 VVNQTRKGKIASMYVLTVVGNRNGVAGFGEGKAESYSLAYKQSCGRAVKNMVYIPR-Y-- 291

Query: 525 NKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGS 698
                  TV   +  K  +V + L   P G G+   P+  ++ + AG++D      GS
Sbjct: 292 ----DKRTVYGVIHKKFHAVRLTLRSRPAGFGLRCNPILHEICRCAGIKDISGEILGS 345


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +1

Query: 643 RSFFRWLVYRTATPQLVVQL 702
           RS F+WL+  TATP+L+V L
Sbjct: 69  RSVFQWLIALTATPRLLVLL 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,829,498
Number of Sequences: 5004
Number of extensions: 76923
Number of successful extensions: 219
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 695512300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)