Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_P16
         (1269 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    26   0.80 
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    25   1.1  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   7.5  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 25.8 bits (54), Expect = 0.80
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 468 LSPFLLLCLYGMLLVQPPFQQSSSNLTTLYKLCLYHSFY 352
           L  FLLL ++  ++V+      +S   TL   C Y S+Y
Sbjct: 603 LGLFLLLDMFNCVVVEETIPSLNSTNVTLSTKCPYPSYY 641


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 25.4 bits (53), Expect = 1.1
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -1

Query: 930 TTICERSLSXWPISYLGCKFT*LSWN 853
           T +CE   + WP   L C     SW+
Sbjct: 156 TPVCEYDHTWWPYDILNCTIHIASWS 181


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 121 LQVVLYLPQLHYLWEPTK 174
           L+++LY  +  YL +PTK
Sbjct: 523 LRMILYFSEFAYLGKPTK 540


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 234,558
Number of Sequences: 438
Number of extensions: 4279
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 43462806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)