Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_P14
         (1233 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103 |Sch...    67   4e-12
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces...    40   0.001
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    27   4.0  
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    27   4.0  

>SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 67.3 bits (157), Expect = 4e-12
 Identities = 31/62 (50%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
 Frame = +2

Query: 101 MPKYYCDYCDTYLTHDSPSVRKTHWXGRKHKDNVKFYYQKWMEEQAQHLID--ATTAAFK 274
           MP+Y CDYC  +LTHDS SVRK H  GR H  NV+ YY K  +E+AQ  ++  A++   K
Sbjct: 1   MPRYLCDYCQVWLTHDSQSVRKAHNAGRAHIQNVQDYYTKVAQEEAQKQLEERASSGFLK 60

Query: 275 AG 280
            G
Sbjct: 61  KG 62


>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 224

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = +2

Query: 101 MPKYYCDYCDTYLTHDSPSVRKTHWXGRKHKDNVK 205
           +PKYYC YC  ++  D+P  R++H    KH+D +K
Sbjct: 8   IPKYYCKYCQIFV-KDTPFARRSHEQTYKHQDAIK 41


>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -3

Query: 349 HYRRIPRWWYCSAFVAKWILSNF 281
           +Y+  P+WWY + F+  + L+ F
Sbjct: 527 NYKEAPQWWYATLFIVVFGLTIF 549


>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 468

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 110 YYCDYCDTYLTHDSPSVRKTHWXG 181
           Y+CD+C   ++ D  S R+  W G
Sbjct: 205 YHCDHCGFQISDDQDSGREWFWDG 228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,998,264
Number of Sequences: 5004
Number of extensions: 55150
Number of successful extensions: 146
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 669373152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)