Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_P14
(1233 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0369 - 9505330-9505652,9507262-9507532,9507649-9507690,950... 89 9e-18
06_01_0784 - 5868545-5868888,5868990-5869085,5870313-5870394,587... 38 0.021
01_01_1054 + 8330081-8330137,8330229-8330321,8330445-8330504,833... 38 0.021
08_02_1617 - 28265252-28265354,28266546-28266608,28266943-28267151 34 0.20
06_01_0187 + 1458802-1458895,1459004-1459464,1459551-1459648,146... 31 2.5
04_04_0198 + 23502657-23502900,23505228-23505298,23505690-235057... 31 2.5
09_06_0194 - 21469815-21470117,21470226-21470376,21470463-214707... 30 4.3
06_01_0173 - 1364219-1364836,1364941-1365123,1365215-1365470,136... 29 5.7
09_02_0448 - 9458463-9459752 29 7.5
07_03_1605 - 28093235-28094031,28094887-28094974 29 7.5
03_03_0262 + 15968884-15969687 29 7.5
12_02_0522 - 19960092-19960595,19962737-19962880,19963042-199631... 29 9.9
>02_02_0369 -
9505330-9505652,9507262-9507532,9507649-9507690,
9508416-9508458,9508853-9508860
Length = 228
Score = 88.6 bits (210), Expect = 9e-18
Identities = 37/51 (72%), Positives = 42/51 (82%)
Frame = +2
Query: 101 MPKYYCDYCDTYLTHDSPSVRKTHWXGRKHKDNVKFYYQKWMEEQAQHLID 253
MP+YYCDYCDTYLTHDSPSVRK H G KHK NV+ YYQ++ E+Q Q LID
Sbjct: 1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLID 51
>06_01_0784 -
5868545-5868888,5868990-5869085,5870313-5870394,
5870639-5870839,5871810-5871818
Length = 243
Score = 37.5 bits (83), Expect = 0.021
Identities = 14/30 (46%), Positives = 22/30 (73%)
Frame = +2
Query: 113 YCDYCDTYLTHDSPSVRKTHWXGRKHKDNV 202
+CD+C Y+ ++ S+R TH G++HKDNV
Sbjct: 12 WCDFCKIYIANNPLSIR-THEIGKRHKDNV 40
>01_01_1054 +
8330081-8330137,8330229-8330321,8330445-8330504,
8330703-8330975,8331107-8331181,8331269-8331325,
8331409-8331549,8331656-8331706,8331795-8331944,
8331974-8332057,8332171-8332273,8332451-8332527,
8333469-8333704,8334000-8334078,8335123-8335218,
8335735-8335828,8336325-8336423,8336663-8337453
Length = 871
Score = 37.5 bits (83), Expect = 0.021
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 95 LKMPKYYCDYCDTYLTHDSPSVRKTHWXGRKH 190
+ + KYYCDYC+ D+P+ RK H G +H
Sbjct: 449 MPLGKYYCDYCEKQF-QDTPAARKRHLDGAQH 479
>08_02_1617 - 28265252-28265354,28266546-28266608,28266943-28267151
Length = 124
Score = 34.3 bits (75), Expect = 0.20
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +2
Query: 101 MPKYYCDYCDTYLTHDSPSVRKTHWXGRKHKDNVK 205
M ++YC +CD Y S SV++ H+ ++HK +K
Sbjct: 61 MGQFYCLHCDRYFA--SESVKEEHYRSKRHKKRIK 93
>06_01_0187 +
1458802-1458895,1459004-1459464,1459551-1459648,
1460918-1461487,1461534-1461822,1461904-1462086,
1462204-1462824
Length = 771
Score = 30.7 bits (66), Expect = 2.5
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -3
Query: 346 YRRIPRWWYCSAFVAKWILSNFAC 275
Y+++P WW+ S +A ++ F C
Sbjct: 444 YKQVPEWWFISILIASVAITMFTC 467
>04_04_0198 +
23502657-23502900,23505228-23505298,23505690-23505727,
23505905-23507693
Length = 713
Score = 30.7 bits (66), Expect = 2.5
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +2
Query: 248 IDATTAAFKAGKIAQNPFGNKGTAIPPPWDP 340
+DAT A G IA P G +G PPP P
Sbjct: 524 VDATVVAAAGGGIAIGPLGEEGLVGPPPPPP 554
>09_06_0194 -
21469815-21470117,21470226-21470376,21470463-21470700,
21470784-21470991,21471107-21471309,21471407-21471508,
21471622-21472945
Length = 842
Score = 29.9 bits (64), Expect = 4.3
Identities = 15/60 (25%), Positives = 20/60 (33%), Gaps = 1/60 (1%)
Frame = +1
Query: 265 GIQSRQNCSKSIWQQRHCNTTTLGSFGNGTRRTPTSCTRWSSR-YDTSSIYGSWRSYGTT 441
G + C+ + + C TRR PT C W D + SW G T
Sbjct: 374 GNMNAGECAAACRRNCSCVAYAYADLSRSTRRDPTRCLMWGGELLDMEKVNESWGDLGET 433
>06_01_0173 -
1364219-1364836,1364941-1365123,1365215-1365470,
1365551-1366120,1367066-1367178,1367344-1367816,
1367906-1367984
Length = 763
Score = 29.5 bits (63), Expect = 5.7
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -3
Query: 346 YRRIPRWWYCSAFVAKWILSNFAC 275
Y+++P WW+ +A ++ FAC
Sbjct: 437 YKQVPEWWFVCILIANIAVTIFAC 460
>09_02_0448 - 9458463-9459752
Length = 429
Score = 29.1 bits (62), Expect = 7.5
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = -2
Query: 239 VLVPPSISDNKTSHCLYVFF 180
V++PP I D K SHCL VFF
Sbjct: 146 VVIPP-IPDKKYSHCLAVFF 164
>07_03_1605 - 28093235-28094031,28094887-28094974
Length = 294
Score = 29.1 bits (62), Expect = 7.5
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +1
Query: 343 GNGTRRT---PTSCTR-WSSRYDTSSIYGSWRSYGTTNDDGSTWANAANDGNETAYDGP 507
GNGTR T P+SCT+ WS + +++ G GTT S + N +E+ D P
Sbjct: 87 GNGTRHTVFGPSSCTQSWSHQAAAAAMGGK----GTTGSRSSISLCSDNYDSESEVDDP 141
>03_03_0262 + 15968884-15969687
Length = 267
Score = 29.1 bits (62), Expect = 7.5
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -3
Query: 307 VAKWILSNFACFECRCCCIDEML 239
V W+ SN C CRC IDE L
Sbjct: 119 VDMWLRSNSTCPLCRCAVIDEAL 141
>12_02_0522 -
19960092-19960595,19962737-19962880,19963042-19963131,
19963215-19963320,19963400-19963574,19963849-19963951,
19964382-19964636,19964726-19964803,19964908-19965000,
19965091-19965222,19965898-19966002,19966127-19966201,
19966284-19966340,19966419-19966532,19966613-19966756,
19966886-19966969,19967071-19967164,19967244-19967369,
19967507-19967580,19967672-19967875,19968234-19968388,
19968860-19968947,19969505-19969730,19970235-19970286,
19970766-19970958,19973221-19973314,19973744-19973788,
19974874-19974896
Length = 1210
Score = 28.7 bits (61), Expect = 9.9
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = +1
Query: 223 DGGTSTTSHRCNNSGIQSRQNCSKSIWQQRHCNTTTLGSFGNGTRRTPTSCTR 381
+ G HR + I+ S S W +RHCN T L ++ G C+R
Sbjct: 175 EAGALVPIHRLKSLRIRRSTPPSSSSWWRRHCNRTPL-TWPLGVYIVSVQCSR 226
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,352,227
Number of Sequences: 37544
Number of extensions: 332433
Number of successful extensions: 929
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3794526552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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