Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_P14
(1233 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X12517-1|CAA31037.1| 159|Homo sapiens protein ( Human mRNA for ... 132 3e-30
BC121083-1|AAI21084.1| 159|Homo sapiens small nuclear ribonucle... 132 3e-30
BC121082-1|AAI21083.1| 159|Homo sapiens small nuclear ribonucle... 132 3e-30
AL139100-2|CAI20350.1| 159|Homo sapiens small nuclear ribonucle... 132 3e-30
AK223098-1|BAD96818.1| 159|Homo sapiens small nuclear ribonucle... 128 3e-29
AL139100-3|CAI20351.1| 180|Homo sapiens small nuclear ribonucle... 126 2e-28
M18465-1|AAA36618.1| 106|Homo sapiens protein ( Human U1 small ... 75 7e-13
AL139100-4|CAI20352.1| 118|Homo sapiens small nuclear ribonucle... 46 4e-04
BC108310-1|AAI08311.1| 376|Homo sapiens WW domain binding prote... 40 0.025
BC104879-1|AAI04880.1| 376|Homo sapiens WW domain-containing bi... 40 0.025
AL157877-5|CAI13223.1| 376|Homo sapiens WW domain binding prote... 40 0.025
AF071185-1|AAC34811.1| 376|Homo sapiens formin binding protein ... 40 0.025
Z69304-1|CAI42009.1| 638|Homo sapiens zinc finger, matrin type ... 34 1.2
Z68868-2|CAI42751.1| 638|Homo sapiens zinc finger, matrin type ... 34 1.2
CR457393-1|CAG33674.1| 170|Homo sapiens LOC55954 protein. 33 2.8
CR456353-1|CAG30239.1| 170|Homo sapiens Em:AC005529.5 protein. 33 2.8
BC009717-1|AAH09717.1| 170|Homo sapiens zinc finger, matrin typ... 33 2.8
AL160311-1|CAB77284.1| 170|Homo sapiens hypothetical protein pr... 33 2.8
>X12517-1|CAA31037.1| 159|Homo sapiens protein ( Human mRNA for U1
small nuclear RNP-specific C protein. ).
Length = 159
Score = 132 bits (319), Expect = 3e-30
Identities = 60/80 (75%), Positives = 63/80 (78%), Gaps = 3/80 (3%)
Frame = +2
Query: 101 MPKYYCDYCDTYLTHDSPSVRKTHWXGRKHKDNVKFYYQKWMEEQAQHLIDATTAAFKAG 280
MPK+YCDYCDTYLTHDSPSVRKTH GRKHK+NVK YYQKWMEEQAQ LID TTAAF+ G
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQG 60
Query: 281 KIAQNPFG---NKGTAIPPP 331
KI PF G IPPP
Sbjct: 61 KIPPTPFSAPPPAGAMIPPP 80
>BC121083-1|AAI21084.1| 159|Homo sapiens small nuclear
ribonucleoprotein polypeptide C protein.
Length = 159
Score = 132 bits (319), Expect = 3e-30
Identities = 60/80 (75%), Positives = 63/80 (78%), Gaps = 3/80 (3%)
Frame = +2
Query: 101 MPKYYCDYCDTYLTHDSPSVRKTHWXGRKHKDNVKFYYQKWMEEQAQHLIDATTAAFKAG 280
MPK+YCDYCDTYLTHDSPSVRKTH GRKHK+NVK YYQKWMEEQAQ LID TTAAF+ G
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQG 60
Query: 281 KIAQNPFG---NKGTAIPPP 331
KI PF G IPPP
Sbjct: 61 KIPPTPFSAPPPAGAMIPPP 80
>BC121082-1|AAI21083.1| 159|Homo sapiens small nuclear
ribonucleoprotein polypeptide C protein.
Length = 159
Score = 132 bits (319), Expect = 3e-30
Identities = 60/80 (75%), Positives = 63/80 (78%), Gaps = 3/80 (3%)
Frame = +2
Query: 101 MPKYYCDYCDTYLTHDSPSVRKTHWXGRKHKDNVKFYYQKWMEEQAQHLIDATTAAFKAG 280
MPK+YCDYCDTYLTHDSPSVRKTH GRKHK+NVK YYQKWMEEQAQ LID TTAAF+ G
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQG 60
Query: 281 KIAQNPFG---NKGTAIPPP 331
KI PF G IPPP
Sbjct: 61 KIPPTPFSAPPPAGAMIPPP 80
>AL139100-2|CAI20350.1| 159|Homo sapiens small nuclear
ribonucleoprotein polypeptide C protein.
Length = 159
Score = 132 bits (319), Expect = 3e-30
Identities = 60/80 (75%), Positives = 63/80 (78%), Gaps = 3/80 (3%)
Frame = +2
Query: 101 MPKYYCDYCDTYLTHDSPSVRKTHWXGRKHKDNVKFYYQKWMEEQAQHLIDATTAAFKAG 280
MPK+YCDYCDTYLTHDSPSVRKTH GRKHK+NVK YYQKWMEEQAQ LID TTAAF+ G
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQG 60
Query: 281 KIAQNPFG---NKGTAIPPP 331
KI PF G IPPP
Sbjct: 61 KIPPTPFSAPPPAGAMIPPP 80
>AK223098-1|BAD96818.1| 159|Homo sapiens small nuclear
ribonucleoprotein polypeptide C variant protein.
Length = 159
Score = 128 bits (310), Expect = 3e-29
Identities = 58/80 (72%), Positives = 62/80 (77%), Gaps = 3/80 (3%)
Frame = +2
Query: 101 MPKYYCDYCDTYLTHDSPSVRKTHWXGRKHKDNVKFYYQKWMEEQAQHLIDATTAAFKAG 280
MPK+YCDYCDTYLTHDSPSVRKTH GRKH++N K YYQKWMEEQAQ LID TTAAF+ G
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHRENEKDYYQKWMEEQAQSLIDKTTAAFQQG 60
Query: 281 KIAQNPFG---NKGTAIPPP 331
KI PF G IPPP
Sbjct: 61 KIPPTPFSAPPPAGAMIPPP 80
>AL139100-3|CAI20351.1| 180|Homo sapiens small nuclear
ribonucleoprotein polypeptide C protein.
Length = 180
Score = 126 bits (304), Expect = 2e-28
Identities = 57/78 (73%), Positives = 61/78 (78%), Gaps = 3/78 (3%)
Frame = +2
Query: 107 KYYCDYCDTYLTHDSPSVRKTHWXGRKHKDNVKFYYQKWMEEQAQHLIDATTAAFKAGKI 286
++YCDYCDTYLTHDSPSVRKTH GRKHK+NVK YYQKWMEEQAQ LID TTAAF+ GKI
Sbjct: 24 RFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQGKI 83
Query: 287 AQNPFG---NKGTAIPPP 331
PF G IPPP
Sbjct: 84 PPTPFSAPPPAGAMIPPP 101
>M18465-1|AAA36618.1| 106|Homo sapiens protein ( Human U1 small
nuclear ribonucleoprotein mRNA, 3' end. ).
Length = 106
Score = 74.5 bits (175), Expect = 7e-13
Identities = 36/53 (67%), Positives = 38/53 (71%), Gaps = 3/53 (5%)
Frame = +2
Query: 182 RKHKDNVKFYYQKWMEEQAQHLIDATTAAFKAGKIAQNPFG---NKGTAIPPP 331
RKHK+NVK YYQKWMEEQAQ LID TTAAF+ GKI PF G IPPP
Sbjct: 4 RKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQGKIPPTPFSAPPPAGAMIPPP 56
>AL139100-4|CAI20352.1| 118|Homo sapiens small nuclear
ribonucleoprotein polypeptide C protein.
Length = 118
Score = 45.6 bits (103), Expect = 4e-04
Identities = 24/39 (61%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Frame = +2
Query: 224 MEEQAQHLIDATTAAFKAGKIAQNPFG---NKGTAIPPP 331
MEEQAQ LID TTAAF+ GKI PF G IPPP
Sbjct: 1 MEEQAQSLIDKTTAAFQQGKIPPTPFSAPPPAGAMIPPP 39
>BC108310-1|AAI08311.1| 376|Homo sapiens WW domain binding protein
4 (formin binding protein 21) protein.
Length = 376
Score = 39.5 bits (88), Expect = 0.025
Identities = 22/60 (36%), Positives = 31/60 (51%)
Frame = +2
Query: 104 PKYYCDYCDTYLTHDSPSVRKTHWXGRKHKDNVKFYYQKWMEEQAQHLIDATTAAFKAGK 283
PK +CDYC ++ + PSV + H G+ HK+NV K + E Q +D KA K
Sbjct: 9 PKKFCDYCKCWIADNRPSV-EFHERGKNHKENV----AKRISEIKQKSLDKAKEEEKASK 63
>BC104879-1|AAI04880.1| 376|Homo sapiens WW domain-containing
binding protein 4 protein.
Length = 376
Score = 39.5 bits (88), Expect = 0.025
Identities = 22/60 (36%), Positives = 31/60 (51%)
Frame = +2
Query: 104 PKYYCDYCDTYLTHDSPSVRKTHWXGRKHKDNVKFYYQKWMEEQAQHLIDATTAAFKAGK 283
PK +CDYC ++ + PSV + H G+ HK+NV K + E Q +D KA K
Sbjct: 9 PKKFCDYCKCWIADNRPSV-EFHERGKNHKENV----AKRISEIKQKSLDKAKEEEKASK 63
>AL157877-5|CAI13223.1| 376|Homo sapiens WW domain binding protein
4 (formin binding protein 21) protein.
Length = 376
Score = 39.5 bits (88), Expect = 0.025
Identities = 22/60 (36%), Positives = 31/60 (51%)
Frame = +2
Query: 104 PKYYCDYCDTYLTHDSPSVRKTHWXGRKHKDNVKFYYQKWMEEQAQHLIDATTAAFKAGK 283
PK +CDYC ++ + PSV + H G+ HK+NV K + E Q +D KA K
Sbjct: 9 PKKFCDYCKCWIADNRPSV-EFHERGKNHKENV----AKRISEIKQKSLDKAKEEEKASK 63
>AF071185-1|AAC34811.1| 376|Homo sapiens formin binding protein 21
protein.
Length = 376
Score = 39.5 bits (88), Expect = 0.025
Identities = 22/60 (36%), Positives = 31/60 (51%)
Frame = +2
Query: 104 PKYYCDYCDTYLTHDSPSVRKTHWXGRKHKDNVKFYYQKWMEEQAQHLIDATTAAFKAGK 283
PK +CDYC ++ + PSV + H G+ HK+NV K + E Q +D KA K
Sbjct: 9 PKKFCDYCKCWIADNRPSV-EFHERGKNHKENV----AKRISEIKQKSLDKAKEEEKASK 63
>Z69304-1|CAI42009.1| 638|Homo sapiens zinc finger, matrin type 1
protein.
Length = 638
Score = 33.9 bits (74), Expect = 1.2
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 113 YCDYCDTYLTHDSPSVRKTHWXGRKHKDNVKFYYQKWMEE 232
+C C L +S + +H+ G KH NV FY+Q E+
Sbjct: 57 FCQVCGVMLQFESQRI--SHYEGEKHAQNVSFYFQMHGEQ 94
>Z68868-2|CAI42751.1| 638|Homo sapiens zinc finger, matrin type 1
protein.
Length = 638
Score = 33.9 bits (74), Expect = 1.2
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 113 YCDYCDTYLTHDSPSVRKTHWXGRKHKDNVKFYYQKWMEE 232
+C C L +S + +H+ G KH NV FY+Q E+
Sbjct: 57 FCQVCGVMLQFESQRI--SHYEGEKHAQNVSFYFQMHGEQ 94
>CR457393-1|CAG33674.1| 170|Homo sapiens LOC55954 protein.
Length = 170
Score = 32.7 bits (71), Expect = 2.8
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 107 KYYCDYCDTYLTHDSPSVRKTHWXGRKHKDNVKFYYQKWMEEQA 238
+Y+CDYCD D+ RK H G +H K +Y + + A
Sbjct: 4 RYFCDYCDRSF-QDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAA 46
>CR456353-1|CAG30239.1| 170|Homo sapiens Em:AC005529.5 protein.
Length = 170
Score = 32.7 bits (71), Expect = 2.8
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 107 KYYCDYCDTYLTHDSPSVRKTHWXGRKHKDNVKFYYQKWMEEQA 238
+Y+CDYCD D+ RK H G +H K +Y + + A
Sbjct: 4 RYFCDYCDRSF-QDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAA 46
>BC009717-1|AAH09717.1| 170|Homo sapiens zinc finger, matrin type 5
protein.
Length = 170
Score = 32.7 bits (71), Expect = 2.8
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 107 KYYCDYCDTYLTHDSPSVRKTHWXGRKHKDNVKFYYQKWMEEQA 238
+Y+CDYCD D+ RK H G +H K +Y + + A
Sbjct: 4 RYFCDYCDRSF-QDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAA 46
>AL160311-1|CAB77284.1| 170|Homo sapiens hypothetical protein
protein.
Length = 170
Score = 32.7 bits (71), Expect = 2.8
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 107 KYYCDYCDTYLTHDSPSVRKTHWXGRKHKDNVKFYYQKWMEEQA 238
+Y+CDYCD D+ RK H G +H K +Y + + A
Sbjct: 4 RYFCDYCDRSF-QDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAA 46
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,958,620
Number of Sequences: 237096
Number of extensions: 1841762
Number of successful extensions: 7760
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 7590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7749
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 17504701140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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