Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_P14
         (1233 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U52002-6|AAB37732.1|  142|Caenorhabditis elegans Hypothetical pr...   113   3e-25
AC006816-2|AAK85508.1|  352|Caenorhabditis elegans Hypothetical ...    30   3.9  
AC006816-1|AAN39661.1|  401|Caenorhabditis elegans Hypothetical ...    30   3.9  
AC006761-2|AAF60547.1|  402|Caenorhabditis elegans Hypothetical ...    30   3.9  
AB071420-1|BAB86940.1|  401|Caenorhabditis elegans 2-amino-3-car...    30   3.9  
Z81584-9|CAB04680.2|  334|Caenorhabditis elegans Hypothetical pr...    29   8.9  

>U52002-6|AAB37732.1|  142|Caenorhabditis elegans Hypothetical
           protein F08B4.7 protein.
          Length = 142

 Score =  113 bits (271), Expect = 3e-25
 Identities = 50/78 (64%), Positives = 57/78 (73%), Gaps = 1/78 (1%)
 Frame = +2

Query: 101 MPKYYCDYCDTYLTHDSPSVRKTHWXGRKHKDNVKFYYQKWMEEQAQHLIDATTAAFKAG 280
           MPKYYCDYCDT+LTHDSPSVRKTH  GRKHKDNV+ +YQKWME+QAQ L+D T  AF   
Sbjct: 1   MPKYYCDYCDTFLTHDSPSVRKTHNGGRKHKDNVRMFYQKWMEDQAQKLVDQTARAFATN 60

Query: 281 KI-AQNPFGNKGTAIPPP 331
           ++    P    G A  PP
Sbjct: 61  RMQGAVPRTTMGMAPVPP 78


>AC006816-2|AAK85508.1|  352|Caenorhabditis elegans Hypothetical
           protein Y71D11A.3a protein.
          Length = 352

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -3

Query: 595 LLLFVHRWSIHKWRSHL-SHWSHW 527
           ++LFVH W +H W   L  +W  W
Sbjct: 180 VVLFVHPWDMHMWDGRLDKYWMPW 203


>AC006816-1|AAN39661.1|  401|Caenorhabditis elegans Hypothetical
           protein Y71D11A.3b protein.
          Length = 401

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -3

Query: 595 LLLFVHRWSIHKWRSHL-SHWSHW 527
           ++LFVH W +H W   L  +W  W
Sbjct: 229 VVLFVHPWDMHMWDGRLDKYWMPW 252


>AC006761-2|AAF60547.1|  402|Caenorhabditis elegans Hypothetical
           protein Y41G9A.5 protein.
          Length = 402

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 18/69 (26%), Positives = 28/69 (40%)
 Frame = +1

Query: 301 WQQRHCNTTTLGSFGNGTRRTPTSCTRWSSRYDTSSIYGSWRSYGTTNDDGSTWANAAND 480
           W +R         +GN          +WSS+Y  +  Y S   YG  +    TW N+  +
Sbjct: 18  WFRRQYGWAGSPYYGNAQYYETQPQQQWSSQYQNNQNYYSPYFYGYQHQ--QTWQNSNQN 75

Query: 481 GNETAYDGP 507
             +T Y+ P
Sbjct: 76  QYQTLYNRP 84


>AB071420-1|BAB86940.1|  401|Caenorhabditis elegans
           2-amino-3-carboxylmuconate-6-semialdehydedecarboxylase
           protein.
          Length = 401

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -3

Query: 595 LLLFVHRWSIHKWRSHL-SHWSHW 527
           ++LFVH W +H W   L  +W  W
Sbjct: 229 VVLFVHPWDMHMWDGRLDKYWMPW 252


>Z81584-9|CAB04680.2|  334|Caenorhabditis elegans Hypothetical
           protein T04C12.2a protein.
          Length = 334

 Score = 28.7 bits (61), Expect = 8.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 301 KWILSNFACFECRCCCIDEMLCLFLHPF 218
           KW+L N  C+   CC +D ++C  + P+
Sbjct: 64  KWVLLNTHCW---CCYVDILICSLITPY 88


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,826,526
Number of Sequences: 27780
Number of extensions: 314552
Number of successful extensions: 936
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3412067766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)