Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_P12
         (1331 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0299 - 17051570-17052474,17053542-17053755                       25   7.3  

>12_02_0299 - 17051570-17052474,17053542-17053755
          Length = 372

 Score = 25.0 bits (52), Expect(2) = 7.3
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = -2

Query: 250 LSXLPFFSXSXXFXFXXXPPPPPP 179
           L  LP F     F     PPPPPP
Sbjct: 304 LPPLPHFPPLPSFYPSPPPPPPPP 327



 Score = 22.6 bits (46), Expect(2) = 7.3
 Identities = 10/26 (38%), Positives = 10/26 (38%)
 Frame = -2

Query: 196 PPPPPPXXXXFFXSXFLFFXXSXXPP 119
           PPPPPP     F      F     PP
Sbjct: 327 PPPPPPSFPWPFPPLAPLFPPYPSPP 352


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,884,432
Number of Sequences: 37544
Number of extensions: 87047
Number of successful extensions: 2442
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2301
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4178635068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)