Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_P11
(1311 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 459 e-130
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 447 e-126
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 402 e-113
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 368 e-103
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 306 4e-84
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 183 4e-47
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 144 3e-35
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 88 3e-18
SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces... 30 0.62
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 30 0.62
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 29 1.9
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar... 29 1.9
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 2.5
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc... 27 7.6
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 459 bits (1132), Expect = e-130
Identities = 215/265 (81%), Positives = 240/265 (90%)
Frame = +2
Query: 137 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNN 316
++GIDLGTTYSCVG F + +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP+N
Sbjct: 4 SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHN 63
Query: 317 TIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLT 496
TIFDAKRLIGRKF+D VQ+DMKHWPF+V+S GKP ++V YKGE KTF PEE+SSMVL
Sbjct: 64 TIFDAKRLIGRKFDDPEVQSDMKHWPFKVISKDGKPVLQVEYKGETKTFTPEEISSMVLM 123
Query: 497 KMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGL 676
KM+ETAEAYLG V +AV+TVPAYFNDSQRQATKDAG I+GLNVLRIINEPTAAAIAYGL
Sbjct: 124 KMRETAEAYLGGKVTDAVVTVPAYFNDSQRQATKDAGLIAGLNVLRIINEPTAAAIAYGL 183
Query: 677 DKKGTGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEF 856
D+ GE NVLIFDLGGGTFDVS+LTIE+GIFEVK+TAGDTHLGGEDFD+R+VNHF+QEF
Sbjct: 184 DRSNQGESNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDSRLVNHFIQEF 243
Query: 857 KRKYKKDLATNKRALRRWRTACERA 931
KRK KKD+ N RA+RR RTACERA
Sbjct: 244 KRKNKKDITGNARAVRRLRTACERA 268
Score = 35.1 bits (77), Expect = 0.022
Identities = 23/47 (48%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +1
Query: 934 RTLSSSXQAXIXIXSXFEGIXFXXXXXXL-XSXXEPDXFRXTMXPXE 1071
RTLSSS QA I I S FEGI F D FR TM P E
Sbjct: 270 RTLSSSAQASIEIDSLFEGIDFYTSITRARFEELCADLFRKTMEPVE 316
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 447 bits (1102), Expect = e-126
Identities = 210/265 (79%), Positives = 236/265 (89%)
Frame = +2
Query: 137 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNN 316
++GIDLGTTYSCVG F + +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP+N
Sbjct: 4 SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHN 63
Query: 317 TIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLT 496
TIFDAKRLIGR+F D VQ+DMKHWPF+V+ GKP I+V +KGE KTF PEE+SSMVL
Sbjct: 64 TIFDAKRLIGRRFNDPEVQSDMKHWPFKVIEKDGKPLIQVEFKGETKTFTPEEISSMVLL 123
Query: 497 KMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGL 676
KM+E+AEA+LG V +AV+TVPAYFNDSQRQATKDAG I+GLNVLRIINEPTAAAIAYGL
Sbjct: 124 KMRESAEAFLGGKVTDAVVTVPAYFNDSQRQATKDAGLIAGLNVLRIINEPTAAAIAYGL 183
Query: 677 DKKGTGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEF 856
D+ E NVLIFDLGGGTFDVS+LTIE+GIFEVK+TAGDTHLGGEDFD+R+VNHF QEF
Sbjct: 184 DRSNQHETNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDSRLVNHFAQEF 243
Query: 857 KRKYKKDLATNKRALRRWRTACERA 931
KRK KKD+ N RA+RR RTACERA
Sbjct: 244 KRKNKKDITGNARAVRRLRTACERA 268
Score = 33.9 bits (74), Expect = 0.050
Identities = 22/47 (46%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +1
Query: 934 RTLSSSXQAXIXIXSXFEGIXFXXXXXXL-XSXXEPDXFRXTMXPXE 1071
RTLSSS QA I I S +EGI F D FR TM P E
Sbjct: 270 RTLSSSAQASIEIDSLYEGIDFYTSITRARFEELCADLFRNTMEPVE 316
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 402 bits (991), Expect = e-113
Identities = 189/265 (71%), Positives = 221/265 (83%)
Frame = +2
Query: 137 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNN 316
A+GIDLGTTYSCV V++ VEII NDQG RTTPS+VAFT+TERL+GDAAKNQ AMNP N
Sbjct: 8 AIGIDLGTTYSCVAVWETANVEIIPNDQGARTTPSFVAFTETERLVGDAAKNQAAMNPRN 67
Query: 317 TIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLT 496
T+FDAKRLIGR++ED Q D+KHWPF+V+ + G P I+V Y GE K F +E+S+MVLT
Sbjct: 68 TVFDAKRLIGRRYEDPETQKDIKHWPFKVIDNNGIPTIEVNYLGEKKQFTAQEISAMVLT 127
Query: 497 KMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGL 676
KMKE +EA L K V+ AVITVPAYF+DSQR ATKDAG I+GLNVLRIINEPTAAAIAYGL
Sbjct: 128 KMKEISEAKLNKRVEKAVITVPAYFSDSQRAATKDAGAIAGLNVLRIINEPTAAAIAYGL 187
Query: 677 DKKGTGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEF 856
D K +NVLIFDLGGGTFDVS+L I+ G+FEV +TAGDTHLGGEDFDN +V HF+QEF
Sbjct: 188 DAKSDKPKNVLIFDLGGGTFDVSLLKIQGGVFEVLATAGDTHLGGEDFDNALVEHFIQEF 247
Query: 857 KRKYKKDLATNKRALRRWRTACERA 931
KRK K D++ + RALRR R+ACERA
Sbjct: 248 KRKQKIDISDDPRALRRLRSACERA 272
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 368 bits (906), Expect = e-103
Identities = 166/264 (62%), Positives = 220/264 (83%)
Frame = +2
Query: 140 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNT 319
+GIDLGTTYSCV V ++G+VEIIANDQGNR TPSYVAFT+ ERL+G+AAKNQ NP NT
Sbjct: 38 IGIDLGTTYSCVAVMKNGRVEIIANDQGNRITPSYVAFTEDERLVGEAAKNQAPSNPENT 97
Query: 320 IFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTK 499
IFD KRLIGRKF++ T+ D+K +PF +V+D +P ++V G+ K F PEE+S+M+L+K
Sbjct: 98 IFDIKRLIGRKFDEKTMAKDIKSFPFHIVNDKNRPLVEVNVGGKKKKFTPEEISAMILSK 157
Query: 500 MKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLD 679
MK+TAEAYLGK V +AV+TVPAYFND+QRQATKDAGTI+GLNV+RI+NEPTAAAIAYGLD
Sbjct: 158 MKQTAEAYLGKPVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVIRIVNEPTAAAIAYGLD 217
Query: 680 KKGTGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFK 859
K T E++++++DLGGGTFDVS+L+I++G+FEV +T+GDTHLGGEDFDNR++N+ + +
Sbjct: 218 KTDT-EKHIVVYDLGGGTFDVSLLSIDNGVFEVLATSGDTHLGGEDFDNRVINYLARTYN 276
Query: 860 RKYKKDLATNKRALRRWRTACERA 931
RK D+ + +A+ + + E+A
Sbjct: 277 RKNNVDVTKDLKAMGKLKREVEKA 300
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 306 bits (752), Expect = 4e-84
Identities = 148/269 (55%), Positives = 194/269 (72%), Gaps = 1/269 (0%)
Frame = +2
Query: 128 KAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAM 304
K P +GIDLGTT SC+ + + ++IAN +G RTTPS VAFT D ERL+G +AK Q +
Sbjct: 49 KGPVIGIDLGTTTSCLAIMEGQTPKVIANAEGTRTTPSVVAFTKDGERLVGVSAKRQAVI 108
Query: 305 NPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSS 484
NP NT F KRLIGR+F++ VQ D+K P+++V + KT+ P ++
Sbjct: 109 NPENTFFATKRLIGRRFKEPEVQRDIKEVPYKIVEHSNGD---AWLEARGKTYSPSQIGG 165
Query: 485 MVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAI 664
+L+KM+ETA YLGK V+NAV+TVPAYFNDSQRQATK AG I+GLNVLR++NEPTAAA+
Sbjct: 166 FILSKMRETASTYLGKDVKNAVVTVPAYFNDSQRQATKAAGAIAGLNVLRVVNEPTAAAL 225
Query: 665 AYGLDKKGTGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHF 844
AYGLDKK + V +FDLGGGTFD+SIL + +G+FEV+ST GDTHLGGEDFD +V H
Sbjct: 226 AYGLDKK--NDAIVAVFDLGGGTFDISILELNNGVFEVRSTNGDTHLGGEDFDVALVRHI 283
Query: 845 VQEFKRKYKKDLATNKRALRRWRTACERA 931
V+ FK+ DL+ ++ A++R R A E+A
Sbjct: 284 VETFKKNEGLDLSKDRLAVQRIREAAEKA 312
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 183 bits (446), Expect = 4e-47
Identities = 99/273 (36%), Positives = 155/273 (56%), Gaps = 5/273 (1%)
Frame = +2
Query: 125 AKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAM 304
++ VGID G + + + V ++ +++I N+ NR+TPS V++ + R +G+AAK+ A
Sbjct: 3 SRTNVVGIDFGNSKTVIAVARNRAIDVIVNEVSNRSTPSLVSYGERSRFLGEAAKSAEAS 62
Query: 305 NPNNTIFDAKRLIGRKFEDATVQ-ADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVS 481
N NT+ KRL GR ++D ++ + ++ G KV Y E+ F ++
Sbjct: 63 NFRNTVGSLKRLAGRTYDDPEIKDIESNFISAKLTEVDGFVGAKVQYLNEETAFSNIQLI 122
Query: 482 SMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAA 661
+ TK+K AEA L +V + VI++PA+F D QR+A +A I+GLN LR++N+ AAA
Sbjct: 123 AAYFTKIKAIAEAELIGSVSDVVISIPAWFTDIQRRALLEAANIAGLNPLRLMNDNAAAA 182
Query: 662 IAYGLDKKGTGE----RNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNR 829
+ YG+ K E R V I D G + VSI+ G F +KST D +LG + D
Sbjct: 183 LTYGITKTDLPEPESPRRVAIVDFGHSNYSVSIVEFSRGQFHIKSTVCDRNLGSRNMDKA 242
Query: 830 MVNHFVQEFKRKYKKDLATNKRALRRWRTACER 928
++++F EFK KYK D+ +N +A R TA ER
Sbjct: 243 LIDYFAAEFKEKYKIDVLSNPKATFRLATAVER 275
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 144 bits (348), Expect = 3e-35
Identities = 76/268 (28%), Positives = 147/268 (54%), Gaps = 6/268 (2%)
Frame = +2
Query: 140 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNT 319
+GI G S + + GK +++AN++GNR PS +++ + G A+ Q+ N +N+
Sbjct: 27 IGISFGNQNSSIAFNRDGKTDVLANEEGNRQIPSILSYHGDQEYHGVQARGQLVRNADNS 86
Query: 320 IFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGED------KTFFPEEVS 481
+ + + L+G+ ++ T+ H+ V+ G+ K+ + ++ K E S
Sbjct: 87 VTNFRDLLGKSHDELTLHHC--HYSANPVNVEGQIGFKITVQEDEESDPKEKILTAHEAS 144
Query: 482 SMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAA 661
L ++ E+AE +LG V V++VP YF D+QR+A + A +GL VL++I++P A
Sbjct: 145 VRHLRRLTESAEDFLGTKVNGCVMSVPVYFTDAQRKALESAANEAGLPVLQLIHDPAAVI 204
Query: 662 IAYGLDKKGTGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNH 841
+A ++ ++ V++ + G +VS+++++ G+ + ++ D +LGGE + +VN
Sbjct: 205 LALMYSEEVLIDKTVVVANFGATRSEVSVVSVKGGLMTILASVHDENLGGEQLTDVLVNF 264
Query: 842 FVQEFKRKYKKDLATNKRALRRWRTACE 925
F +EF++K D N R+L + R CE
Sbjct: 265 FAKEFEKKNGIDPRKNARSLAKLRAQCE 292
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 87.8 bits (208), Expect = 3e-18
Identities = 70/272 (25%), Positives = 126/272 (46%), Gaps = 16/272 (5%)
Frame = +2
Query: 140 VGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNN 316
+ ID GT ++ + + G +EI+ R S VAF ER+ G A N P +
Sbjct: 25 LAIDYGTEWTKAALIKPGIPLEIVLTKDTRRKEQSAVAFKGNERIFGVDASNLATRFPAH 84
Query: 317 TIFDAKRLIGRK-FEDATVQADMKHWPFEVVSDGGKPKIKVAYK-GEDKTFFPEEVSSMV 490
+I + K L+ E VQ +P + + + +++ +++ + EE+ +M
Sbjct: 85 SIRNVKELLDTAGLESVLVQKYQSSYPAIQLVENEETTSGISFVISDEENYSLEEIIAMT 144
Query: 491 LTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAY 670
+ AE + + + V+TVP +FN+ QR +A I +VL +I++ A AI Y
Sbjct: 145 MEHYISLAEEMAHEKITDLVLTVPPHFNELQRSILLEAARILNKHVLALIDDNVAVAIEY 204
Query: 671 GLDKK-GTGERNVLIFDLGGGTFDVSIL---TIE-------DGIFEVKSTA-GDT-HLGG 811
L + T +I+D G G+ +++ T+E I +++ A G T L G
Sbjct: 205 SLSRSFSTDPTYNIIYDSGSGSTSATVISFDTVEGSSLGKKQNITRIRALASGFTLKLSG 264
Query: 812 EDFDNRMVNHFVQEFKRKYKKDLATNKRALRR 907
+ + +++ F +K+ DL+ N RAL R
Sbjct: 265 NEINRKLIGFMKNSFYQKHGIDLSHNHRALAR 296
>SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 451
Score = 30.3 bits (65), Expect = 0.62
Identities = 19/76 (25%), Positives = 34/76 (44%)
Frame = +2
Query: 245 VAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKP 424
+ F+D E GD A + P + AK L+G+ + + D P++V+ D P
Sbjct: 125 IIFSDDEPYPGDVASRIYFLVPKFELPRAKELVGKNIDAKYITWDEDENPYQVLYDRLGP 184
Query: 425 KIKVAYKGEDKTFFPE 472
+K+ G + F +
Sbjct: 185 -LKLMIDGTVRNFIAQ 199
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 30.3 bits (65), Expect = 0.62
Identities = 36/157 (22%), Positives = 65/157 (41%)
Frame = -1
Query: 822 SKSSPPKWVSPAVDFTSKIPSSMVRMDTSKVPPPRSKISTFRSPVPFLSRP*AIAAAVGS 643
S SS P S + DF+S I + + +S +P S +S+ S S P + + ++ S
Sbjct: 541 SSSSIP--TSSSSDFSSSITTISSGISSSSIPSTFSSVSSILSSST--SSPSSTSLSISS 596
Query: 642 LMIRRTFKPEMVPASFVACL*ESLKYAGTVITAFCTVLPR*ASAVSFIFVSTMELTSSGK 463
TF S + I++ T+L + S + +S+ + S
Sbjct: 597 SSTSSTFSSAST---------SSPSSISSSISSSSTILSSPTPSTSSLMISSSSIISGSS 647
Query: 462 KVLSSPLYATLILGLPPSLTTSKGQCFMSACTVASSN 352
+LSS + + + SL+T S+ T+ SS+
Sbjct: 648 SILSSSIST---IPISSSLSTYSSSVIPSSSTLVSSS 681
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 28.7 bits (61), Expect = 1.9
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -1
Query: 822 SKSSPPKWVSPAVDFTSKIPSSMVRMDTSKVPPPRSK 712
+KSSP K VSP V SK +S V + S +P +K
Sbjct: 203 NKSSPVKHVSPNVKNNSKKTASSVNSNHSSIPSSITK 239
>SPAC25B8.04c |||mitochondrial splicing suppressor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 28.7 bits (61), Expect = 1.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 132 HPQ*ESIWVPRTLALVSSSTGRWRSSPTTRAT 227
HP S W+P LVS+ W +SP+++ T
Sbjct: 283 HPLYSSSWIPTLHDLVSTRCSVWLTSPSSQRT 314
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.3 bits (60), Expect = 2.5
Identities = 17/49 (34%), Positives = 19/49 (38%)
Frame = -1
Query: 822 SKSSPPKWVSPAVDFTSKIPSSMVRMDTSKVPPPRSKISTFRSPVPFLS 676
+ S PP P + IP PPPRS ST R P P S
Sbjct: 333 NSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSS 381
>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 807
Score = 26.6 bits (56), Expect = 7.6
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -3
Query: 139 CGCFCHFVFLISL-VTCSLKQLSKRARL 59
C CFC + FL+S+ S+ QL R ++
Sbjct: 384 CFCFCQYPFLLSMGAKISILQLDARRKM 411
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,367,248
Number of Sequences: 5004
Number of extensions: 90634
Number of successful extensions: 324
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 316
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 717371258
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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