Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_P09
         (1318 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    28   2.5  
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|...    27   7.6  

>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 595 NSYLISHTIAFQYPETAFSHRLKSLTSNNSV 503
           NS ++ +    Q  E  FSH++K LTS N +
Sbjct: 290 NSLIMEYKNELQSAEEHFSHKIKELTSENEL 320


>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 503

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 233 GSKMKVFTQKRNPLTGCTEWDMQDEDYDYHQEIARSAF 346
           G ++KV++     L  C   D  +ED D   ++AR+AF
Sbjct: 37  GGRVKVYSPSTEKLI-CEVADADEEDVDIAVKVARAAF 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,158,395
Number of Sequences: 5004
Number of extensions: 55094
Number of successful extensions: 130
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 721345614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)