Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_P09
         (1318 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0038 + 375893-376093,376758-376883,376978-377177,377411-37...    76   7e-14
07_03_1445 + 26580293-26580610,26580814-26581314,26581411-265815...    38   0.013
06_01_0312 + 2246899-2247105,2247182-2247374,2247607-2247712,224...    33   0.66 
02_02_0106 + 6814391-6817007,6817086-6817462                           31   2.0  
12_02_0959 + 24818310-24818369,24818689-24819136,24819265-248194...    30   4.7  
02_02_0109 + 6830802-6833412,6833491-6833861                           30   4.7  

>06_01_0038 +
           375893-376093,376758-376883,376978-377177,377411-377502,
           377966-378222,378610-378846,378986-379063,380422-380571,
           380646-380720,381109-381205,381289-381341
          Length = 521

 Score = 75.8 bits (178), Expect = 7e-14
 Identities = 43/115 (37%), Positives = 64/115 (55%)
 Frame = +2

Query: 506 TIVACEAFQPMAECCLRILECNGVADKVTVIPKRSTELTVGENGDMKQKANILVTEVFDT 685
           ++ ACE++ PM +   R+L  NG+ ++V V  KRS EL V +  D+   A+ILV+E+ D+
Sbjct: 17  SVSACESYLPMGKLMRRVLRANGMENRVKVFHKRSDELKVRD--DLDSPADILVSEILDS 74

Query: 686 ELIGEGALSTFSHAHKFLLXEXAIXVPXSXVIYAQXVXCPXXXKWNKLXDLXDED 850
           EL+GEG + T   A+  LL +    VP     Y Q V       W KL DL + +
Sbjct: 75  ELLGEGLIPTLQQAYDMLLAKNPKIVPYRATTYGQLVESTFL--W-KLHDLHNNE 126


>07_03_1445 +
           26580293-26580610,26580814-26581314,26581411-26581508,
           26581900-26581978,26582065-26582325,26582409-26582576,
           26582800-26583237
          Length = 620

 Score = 38.3 bits (85), Expect = 0.013
 Identities = 41/157 (26%), Positives = 66/157 (42%), Gaps = 12/157 (7%)
 Frame = +2

Query: 350 DMLHDTERNQKYXXALKLAIEKMHNDGKKAXVLDXXXXXXXXSIMAAKSGADTIVACEAF 529
           +ML D  R + Y  AL L    + N    A VLD        S+ AAK+GA  ++A +  
Sbjct: 268 EMLGDKVRTEAYRDAL-LGNPSLMNG---ATVLDVGCGTGILSLFAAKAGASRVIAVDGS 323

Query: 530 QPMAECCLRILECNGVA--DKVTVIPKRSTEL-----TVGENGDMK-----QKANILVTE 673
             M      + + NG    + + +  KR T++     T  E  + K      K ++LV+E
Sbjct: 324 AKMVSVATEVAKSNGFLYDENMEMQQKRDTQVITVVHTKAEELNHKIQVPSNKFDVLVSE 383

Query: 674 VFDTELIGEGALSTFSHAHKFLLXEXAIXVPXSXVIY 784
                L+ E  LS+  +A    L      +P +  I+
Sbjct: 384 WMGYCLLYESMLSSVLYARDHFLKPGGAILPDTATIF 420


>06_01_0312 +
           2246899-2247105,2247182-2247374,2247607-2247712,
           2247958-2248147,2248472-2248657,2248739-2248822,
           2249207-2249383
          Length = 380

 Score = 32.7 bits (71), Expect = 0.66
 Identities = 34/111 (30%), Positives = 48/111 (43%)
 Frame = +2

Query: 311 YDYHQEIARSAFADMLHDTERNQKYXXALKLAIEKMHNDGKKAXVLDXXXXXXXXSIMAA 490
           Y YHQ+       +ML D  R   Y  A+       H+   K  VLD        +I +A
Sbjct: 38  YLYHQK-------EMLCDRVRMDAYHSAV---FRNAHHFRGKV-VLDVGTGSGILAIWSA 86

Query: 491 KSGADTIVACEAFQPMAECCLRILECNGVADKVTVIPKRSTELTVGENGDM 643
           ++GA  + A EA   MAE    +   N VAD V VI     ++ + E  D+
Sbjct: 87  QAGARKVYAVEATN-MAEHARELARANDVADIVEVIQGSMEDVVLPEKVDV 136


>02_02_0106 + 6814391-6817007,6817086-6817462
          Length = 997

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 197 SHKRFKSXVSRIGSKMKVFTQKRNPLTGCTEWDM 298
           S+ RF   +  +  KMKVF    N L+G   WD+
Sbjct: 466 SNNRFSGPIPTLAGKMKVFRAANNLLSGEIPWDL 499


>12_02_0959 +
           24818310-24818369,24818689-24819136,24819265-24819482,
           24819651-24819929
          Length = 334

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 15/97 (15%)
 Frame = +2

Query: 134 YACKYMNTIYKXTXGXYLXASSHKRFKSXVSRIGSKMKVFTQKR-------NPL-----T 277
           Y CK  N+I     G YL + S       V  IGS  K  T K+       NP       
Sbjct: 118 YMCKNFNSIGGQVAGQYLSSDSEDTSTPSV-LIGSPHKASTSKKLSGKTKTNPRKEPEDP 176

Query: 278 GCTEWDMQDE---DYDYHQEIARSAFADMLHDTERNQ 379
            C+ W + +E   D D H +   + FA+ L   ER++
Sbjct: 177 NCSHWHVIEEKNTDDDEHADYHYTRFANYLTGEERDE 213


>02_02_0109 + 6830802-6833412,6833491-6833861
          Length = 993

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 197 SHKRFKSXVSRIGSKMKVFTQKRNPLTGCTEWDM 298
           S+ +F   +  +  KMKVF    N L+G   WD+
Sbjct: 466 SNNKFSGPIPTLAGKMKVFIAANNLLSGEIPWDL 499


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,859,582
Number of Sequences: 37544
Number of extensions: 357219
Number of successful extensions: 640
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4120436808
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)