Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_P09
         (1318 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL034364-2|CAA22252.1|  630|Caenorhabditis elegans Hypothetical ...   141   1e-33
AL110477-12|CAB54335.1|  348|Caenorhabditis elegans Hypothetical...    33   0.34 
M93256-1|AAB59181.1| 1110|Caenorhabditis elegans tra-1 protein.        31   2.4  
AL117202-5|CAB61040.2| 1109|Caenorhabditis elegans Hypothetical ...    31   2.4  
AF024503-9|AAG24084.1|  327|Caenorhabditis elegans Serpentine re...    29   9.6  

>AL034364-2|CAA22252.1|  630|Caenorhabditis elegans Hypothetical
           protein W06D4.4 protein.
          Length = 630

 Score =  141 bits (341), Expect = 1e-33
 Identities = 85/202 (42%), Positives = 112/202 (55%), Gaps = 2/202 (0%)
 Frame = +2

Query: 248 VFTQKRNPLTGCTEWDMQDEDYDYHQEIARSAFADMLHDTERNQKYXXALKLAI-EKMH- 421
           +F +K N  TG  EW + +EDYD  QE+ARS F DM+ D +RN K+   LK  I EK H 
Sbjct: 1   MFLEKINQKTGEREWVVAEEDYDMAQELARSRFGDMILDFDRNDKFLAGLKTTIAEKKHE 60

Query: 422 NDGKKAXVLDXXXXXXXXSIMAAKSGADTIVACEAFQPMAECCLRILECNGVADKVTVIP 601
           N   K  VLD        S+MAA+ GAD + A E F+PM +C   I   +  +DK+TVI 
Sbjct: 61  NTDGKVHVLDIGTGTGLLSLMAAREGADKVTALEVFKPMGDCARHITSNSPWSDKITVIS 120

Query: 602 KRSTELTVGENGDMKQKANILVTEVFDTELIGEGALSTFSHAHKFLLXEXAIXVPXSXVI 781
           +RST+  V + G    +A+I+V EVFDTELIGEGAL TF  A + L       VP +  +
Sbjct: 121 ERSTD--VSQIGG--SRADIIVAEVFDTELIGEGALRTFKEALERLAKPGCRVVPSTGNV 176

Query: 782 YAQXVXCPXXXKWNKLXDLXDE 847
           Y   V       +N +  L  E
Sbjct: 177 YIVPVESHLLKMFNDIPRLNGE 198


>AL110477-12|CAB54335.1|  348|Caenorhabditis elegans Hypothetical
           protein Y113G7B.17 protein.
          Length = 348

 Score = 33.5 bits (73), Expect = 0.34
 Identities = 42/174 (24%), Positives = 67/174 (38%), Gaps = 2/174 (1%)
 Frame = +2

Query: 269 PLTGCTEWDMQDEDYDYHQEIARSAFADMLHDTERNQKYXXALKLAIEKMHNDG--KKAX 442
           P+      ++  +DY +          +ML D  R   Y  ++       HN    K   
Sbjct: 12  PVAAPAAKELTSKDYYFDSYAHFGIHEEMLKDEVRTTTYRNSI------YHNSHLFKDKV 65

Query: 443 VLDXXXXXXXXSIMAAKSGADTIVACEAFQPMAECCLRILECNGVADKVTVIPKRSTELT 622
           V+D        S+ AAK+GA  + A E F  MA    +I+  N +   V VI  +  +  
Sbjct: 66  VMDVGSGTGILSMFAAKAGAKKVFAME-FSNMALTSRKIIADNNLDHIVEVIQAKVED-- 122

Query: 623 VGENGDMKQKANILVTEVFDTELIGEGALSTFSHAHKFLLXEXAIXVPXSXVIY 784
           V E     +K +I+++E     L  E  L+T   A    L    +  P    +Y
Sbjct: 123 VHELPGGIEKVDIIISEWMGYCLFYESMLNTVLVARDRWLAPNGMLFPDKARLY 176


>M93256-1|AAB59181.1| 1110|Caenorhabditis elegans tra-1 protein.
          Length = 1110

 Score = 30.7 bits (66), Expect = 2.4
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = -2

Query: 642 ISPFSPTVSSVDLFGITVTLSATPLHSNILRQHSAIG*KASQATIVSAPDFAAIMERSPV 463
           +SPFSP +       +   L   P  +++      +  +A  A +VSAP   A +  +PV
Sbjct: 520 LSPFSPLLPPSRAPNVMAMLQTPPTPTSVAPMFDIMTSRAPMAPVVSAPTAPAPLVPAPV 579

Query: 462 P 460
           P
Sbjct: 580 P 580


>AL117202-5|CAB61040.2| 1109|Caenorhabditis elegans Hypothetical
           protein Y47D3A.6a protein.
          Length = 1109

 Score = 30.7 bits (66), Expect = 2.4
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = -2

Query: 642 ISPFSPTVSSVDLFGITVTLSATPLHSNILRQHSAIG*KASQATIVSAPDFAAIMERSPV 463
           +SPFSP +       +   L   P  +++      +  +A  A +VSAP   A +  +PV
Sbjct: 519 LSPFSPLLPPSRAPNVMAMLQTPPTPTSVAPMFDIMTSRAPMAPVVSAPTAPAPLVPAPV 578

Query: 462 P 460
           P
Sbjct: 579 P 579


>AF024503-9|AAG24084.1|  327|Caenorhabditis elegans Serpentine
           receptor, class h protein266 protein.
          Length = 327

 Score = 28.7 bits (61), Expect = 9.6
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +2

Query: 479 IMAAKSGAD-TIVACEAFQPMAECCLRILECNGVADKVTVIPKRSTELTV 625
           I+ +  G D TI+   A +P  E C+R L    +  +V V+P R T ++V
Sbjct: 270 IIVSLHGIDSTIIMLWAHKPYREFCMRALAKLKLPVRVRVLPTRPTTISV 319


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,698,125
Number of Sequences: 27780
Number of extensions: 314402
Number of successful extensions: 746
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3683964012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)