Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_P08
         (1305 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032627-21|CAD66221.1|  289|Caenorhabditis elegans Hypothetical...    31   1.4  
U23177-8|AAM22054.1|  409|Caenorhabditis elegans Hypothetical pr...    29   7.2  
U23177-7|AAM22053.1|  867|Caenorhabditis elegans Hypothetical pr...    29   7.2  

>AL032627-21|CAD66221.1|  289|Caenorhabditis elegans Hypothetical
            protein Y41C4A.19 protein.
          Length = 289

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 19/54 (35%), Positives = 20/54 (37%)
 Frame = -3

Query: 1108 PPKXXGLVNPXNQXXCPGXXNXXLPGWDSXRXLPG*GXPVGXNGGFXHPAQLGA 947
            PP   G   P      PG      PG+ S    PG   P G  G   HP Q GA
Sbjct: 141  PPGAPGSPGPQGDAGAPGQ-----PGFGSGFGAPGPAGPKGQRGAPGHPGQAGA 189


>U23177-8|AAM22054.1|  409|Caenorhabditis elegans Hypothetical
           protein C56G2.1b protein.
          Length = 409

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = -3

Query: 181 VSIAFRSILSEI*HIFPYDGTNHWSNRSIRK 89
           +S+ F+S    + H+ P DGT +WS+ +++K
Sbjct: 287 MSLPFQSTEVMLAHVRPVDGTTNWSDAAMQK 317


>U23177-7|AAM22053.1|  867|Caenorhabditis elegans Hypothetical
           protein C56G2.1a protein.
          Length = 867

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = -3

Query: 181 VSIAFRSILSEI*HIFPYDGTNHWSNRSIRK 89
           +S+ F+S    + H+ P DGT +WS+ +++K
Sbjct: 745 MSLPFQSTEVMLAHVRPVDGTTNWSDAAMQK 775


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,675,692
Number of Sequences: 27780
Number of extensions: 417914
Number of successful extensions: 1052
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3642337300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)