Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_P07
         (1297 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.08c |cox12||cytochrome c oxidase subunit VIb|Schizosacc...    93   1e-19
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    28   2.4  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   7.5  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    26   9.9  

>SPCC1442.08c |cox12||cytochrome c oxidase subunit
           VIb|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 83

 Score = 92.7 bits (220), Expect = 1e-19
 Identities = 35/62 (56%), Positives = 44/62 (70%)
 Frame = +3

Query: 186 PNQNQTRHCYQSYVDFHRCQKVRGEKYEPCYYFKRVYRSLCPNEWVDKWDNQRAEGTFAG 365
           PN NQT+HC+QSY+D+ RC K +GE + PC  F   Y+SLCP EWV++WD QR  GTF  
Sbjct: 22  PNTNQTKHCFQSYIDYFRCIKAKGEDFVPCKQFWHAYQSLCPMEWVERWDEQRENGTFPA 81

Query: 366 RI 371
            I
Sbjct: 82  PI 83


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = +1

Query: 208  TATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 366
            T++ V  TST      A NT+ +  S      S P++ ST   TS P   S V
Sbjct: 2353 TSSTVVNTSTPITSSTALNTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSV 2405



 Score = 27.5 bits (58), Expect = 4.3
 Identities = 18/53 (33%), Positives = 23/53 (43%)
 Frame = +1

Query: 208  TATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 366
            T++ V  TST      A NT+    S      S P++ ST   TS P   S V
Sbjct: 1117 TSSTVVNTSTPITSSTALNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTV 1169



 Score = 27.5 bits (58), Expect = 4.3
 Identities = 18/53 (33%), Positives = 23/53 (43%)
 Frame = +1

Query: 208  TATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 366
            T++ V  TST      A NT+    S      S P++ ST   TS P   S V
Sbjct: 2761 TSSTVVNTSTPITSSTALNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTV 2813


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +1

Query: 166  TFRPTGSLTKIRRGTATKVTWTSTVARKFAAKNTNHATISRECT-GLSAPMSGSTSGTTS 342
            T  PT S+T +   ++ + T +ST+A   +A   +    S   T   SA  S S+S  T+
Sbjct: 1088 TGSPTSSVTAVSSTSSVEGTASSTIAAAASAATLSSDAASGSSTVTSSATASSSSSAATT 1147

Query: 343  A 345
            A
Sbjct: 1148 A 1148


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 150 PTSKQHLSTHGVPNQNQTRHCYQS 221
           P SK+ +STHG P+ N +   Y S
Sbjct: 400 PHSKEIMSTHGFPDNNLSIWSYSS 423


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,432,532
Number of Sequences: 5004
Number of extensions: 58575
Number of successful extensions: 152
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 707435368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)