Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_P06
(1367 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC8D2.03c |hhf2|ams3, h4.2|histone H4 h4.2|Schizosaccharomyces... 145 1e-35
SPBC1105.12 |hhf3|h4.3|histone H4 h4.3|Schizosaccharomyces pombe... 145 1e-35
SPAC1834.03c |hhf1|h4.1|histone H4 h4.1|Schizosaccharomyces pomb... 145 1e-35
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2... 50 7e-07
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.069
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 2.0
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 28 3.5
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 28 3.5
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |... 27 8.0
>SPBC8D2.03c |hhf2|ams3, h4.2|histone H4 h4.2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 103
Score = 145 bits (352), Expect = 1e-35
Identities = 68/77 (88%), Positives = 76/77 (98%)
Frame = +2
Query: 134 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRSVLKVFLENVIRDAVTYTEHAKRKT 313
+LRDNIQGITKPAIRRLARRGGVKRIS L+YEETR+VLK+FLENVIRDAVTYTEHAKRKT
Sbjct: 22 ILRDNIQGITKPAIRRLARRGGVKRISALVYEETRAVLKLFLENVIRDAVTYTEHAKRKT 81
Query: 314 VTAMDVVYALKRQGRTL 364
VT++DVVY+LKRQGRT+
Sbjct: 82 VTSLDVVYSLKRQGRTI 98
>SPBC1105.12 |hhf3|h4.3|histone H4 h4.3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 103
Score = 145 bits (352), Expect = 1e-35
Identities = 68/77 (88%), Positives = 76/77 (98%)
Frame = +2
Query: 134 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRSVLKVFLENVIRDAVTYTEHAKRKT 313
+LRDNIQGITKPAIRRLARRGGVKRIS L+YEETR+VLK+FLENVIRDAVTYTEHAKRKT
Sbjct: 22 ILRDNIQGITKPAIRRLARRGGVKRISALVYEETRAVLKLFLENVIRDAVTYTEHAKRKT 81
Query: 314 VTAMDVVYALKRQGRTL 364
VT++DVVY+LKRQGRT+
Sbjct: 82 VTSLDVVYSLKRQGRTI 98
>SPAC1834.03c |hhf1|h4.1|histone H4 h4.1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 103
Score = 145 bits (352), Expect = 1e-35
Identities = 68/77 (88%), Positives = 76/77 (98%)
Frame = +2
Query: 134 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRSVLKVFLENVIRDAVTYTEHAKRKT 313
+LRDNIQGITKPAIRRLARRGGVKRIS L+YEETR+VLK+FLENVIRDAVTYTEHAKRKT
Sbjct: 22 ILRDNIQGITKPAIRRLARRGGVKRISALVYEETRAVLKLFLENVIRDAVTYTEHAKRKT 81
Query: 314 VTAMDVVYALKRQGRTL 364
VT++DVVY+LKRQGRT+
Sbjct: 82 VTSLDVVYSLKRQGRTI 98
>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 479
Score = 50.0 bits (114), Expect = 7e-07
Identities = 22/60 (36%), Positives = 35/60 (58%)
Frame = +2
Query: 173 IRRLARRGGVKRISGLIYEETRSVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 352
IR+LA K+I+G + EE + ++F + + D + +HA RKT+ DVV +KRQ
Sbjct: 391 IRKLANSYSQKKIAGSVIEELTTASELFFKQIANDLSAFADHAHRKTIDTQDVVLLMKRQ 450
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 33.5 bits (73), Expect = 0.069
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +1
Query: 823 PPPPPGXXXXXXGPPXPXPPP 885
PPPPP GPP P PPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPP 782
Score = 30.3 bits (65), Expect = 0.65
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +1
Query: 823 PPPPPGXXXXXXGPPXPXPPP 885
PPPPP PP P PPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPP 783
Score = 27.1 bits (57), Expect = 6.0
Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Frame = +1
Query: 817 KNPPPPPGXXXXXXGPPXPXP-PPXXP 894
K+PPPPP P P P PP P
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAP 756
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.7 bits (61), Expect = 2.0
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = +1
Query: 823 PPPPPGXXXXXXGPPXPXPPPXXPXXP 903
PPPP PP P PP P P
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.9 bits (59), Expect = 3.5
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +1
Query: 823 PPPPPGXXXXXXGPPXPXPPP 885
PPPPP P P PPP
Sbjct: 10 PPPPPPPGFEPPSQPPPPPPP 30
Score = 27.5 bits (58), Expect = 4.6
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +1
Query: 820 NPPPPPGXXXXXXGPPXPXPPPXXP 894
NPPPPP PP PPP P
Sbjct: 8 NPPPPP--PPPGFEPPSQPPPPPPP 30
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 27.9 bits (59), Expect = 3.5
Identities = 28/106 (26%), Positives = 28/106 (26%)
Frame = -1
Query: 1139 GGXPPXXXGXXXFXXXXGGGGXXGXKXPXXGPXXXXGPXXGXXXKKXFXXXXXPXXXGGX 960
GG G GGG G GP G G F G
Sbjct: 169 GGLASHALGNLFHHRGHNGGGFGGFGGGSGGPPPGPGGFGGFGG---FGGEGHHHGGHGG 225
Query: 959 XXXPPXGXXKXXXXXXXXXGXXGXXGGGXGXGGPKXKXXXPGGGGG 822
P G G G GG G GGP PGG GG
Sbjct: 226 FGGGPGGFEGGPGGFGGGPGGFGGGLGGFG-GGPGGFGGGPGGHGG 270
>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 26.6 bits (56), Expect = 8.0
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 221 IYEETRSVLKVFLEN-VIRDAVTYTEHAKRKTVTAMDVVYALKRQG 355
I +ET VL E+ I D+ T T+ KRK V ++Y R+G
Sbjct: 132 ITDETPKVLSEIKEHGTISDSKTLTDLKKRKLVERNKIMYFSLRKG 177
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,723,331
Number of Sequences: 5004
Number of extensions: 37725
Number of successful extensions: 152
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 755127640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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