Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_P05
         (1297 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.03c |hhf2|ams3, h4.2|histone H4 h4.2|Schizosaccharomyces...   143   4e-35
SPBC1105.12 |hhf3|h4.3|histone H4 h4.3|Schizosaccharomyces pombe...   143   4e-35
SPAC1834.03c |hhf1|h4.1|histone H4 h4.1|Schizosaccharomyces pomb...   143   4e-35
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2...    50   7e-07
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |...    27   7.5  

>SPBC8D2.03c |hhf2|ams3, h4.2|histone H4 h4.2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 103

 Score =  143 bits (347), Expect = 4e-35
 Identities = 67/77 (87%), Positives = 75/77 (97%)
 Frame = +2

Query: 134 VLRDNIQGXTKPAIRRLARRGGVKRISGLIYEETRSVLKVFLENVIRDAVTYTEHAKRKT 313
           +LRDNIQG TKPAIRRLARRGGVKRIS L+YEETR+VLK+FLENVIRDAVTYTEHAKRKT
Sbjct: 22  ILRDNIQGITKPAIRRLARRGGVKRISALVYEETRAVLKLFLENVIRDAVTYTEHAKRKT 81

Query: 314 VTAMDVVYALKRQGRTL 364
           VT++DVVY+LKRQGRT+
Sbjct: 82  VTSLDVVYSLKRQGRTI 98


>SPBC1105.12 |hhf3|h4.3|histone H4 h4.3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 103

 Score =  143 bits (347), Expect = 4e-35
 Identities = 67/77 (87%), Positives = 75/77 (97%)
 Frame = +2

Query: 134 VLRDNIQGXTKPAIRRLARRGGVKRISGLIYEETRSVLKVFLENVIRDAVTYTEHAKRKT 313
           +LRDNIQG TKPAIRRLARRGGVKRIS L+YEETR+VLK+FLENVIRDAVTYTEHAKRKT
Sbjct: 22  ILRDNIQGITKPAIRRLARRGGVKRISALVYEETRAVLKLFLENVIRDAVTYTEHAKRKT 81

Query: 314 VTAMDVVYALKRQGRTL 364
           VT++DVVY+LKRQGRT+
Sbjct: 82  VTSLDVVYSLKRQGRTI 98


>SPAC1834.03c |hhf1|h4.1|histone H4 h4.1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score =  143 bits (347), Expect = 4e-35
 Identities = 67/77 (87%), Positives = 75/77 (97%)
 Frame = +2

Query: 134 VLRDNIQGXTKPAIRRLARRGGVKRISGLIYEETRSVLKVFLENVIRDAVTYTEHAKRKT 313
           +LRDNIQG TKPAIRRLARRGGVKRIS L+YEETR+VLK+FLENVIRDAVTYTEHAKRKT
Sbjct: 22  ILRDNIQGITKPAIRRLARRGGVKRISALVYEETRAVLKLFLENVIRDAVTYTEHAKRKT 81

Query: 314 VTAMDVVYALKRQGRTL 364
           VT++DVVY+LKRQGRT+
Sbjct: 82  VTSLDVVYSLKRQGRTI 98


>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 479

 Score = 50.0 bits (114), Expect = 7e-07
 Identities = 22/60 (36%), Positives = 35/60 (58%)
 Frame = +2

Query: 173 IRRLARRGGVKRISGLIYEETRSVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 352
           IR+LA     K+I+G + EE  +  ++F + +  D   + +HA RKT+   DVV  +KRQ
Sbjct: 391 IRKLANSYSQKKIAGSVIEELTTASELFFKQIANDLSAFADHAHRKTIDTQDVVLLMKRQ 450


>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 221 IYEETRSVLKVFLEN-VIRDAVTYTEHAKRKTVTAMDVVYALKRQG 355
           I +ET  VL    E+  I D+ T T+  KRK V    ++Y   R+G
Sbjct: 132 ITDETPKVLSEIKEHGTISDSKTLTDLKKRKLVERNKIMYFSLRKG 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,004,119
Number of Sequences: 5004
Number of extensions: 29292
Number of successful extensions: 84
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 707435368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)