Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_P04
         (1281 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9SN46 Cluster: Extensin-like protein; n=4; Magnoliophy...    28   7.3  
UniRef50_Q5T8P6 Cluster: RNA-binding protein 26; n=31; Euteleost...    34   9.1  

>UniRef50_Q9SN46 Cluster: Extensin-like protein; n=4;
           Magnoliophyta|Rep: Extensin-like protein - Arabidopsis
           thaliana (Mouse-ear cress)
          Length = 839

 Score = 27.9 bits (59), Expect(2) = 7.3
 Identities = 16/69 (23%), Positives = 21/69 (30%)
 Frame = -2

Query: 755 PPPXXXXXXXXXXXXXXXXLXPPPXPXFXFXXXXXPLXXNFFXXFXPLFFXXPFPPXXXX 576
           PPP                  PPP P   +     P+  +      P++   P PP    
Sbjct: 770 PPPSPAHYSPPPSPPVYYYNSPPPPPAVHYSPPPPPVIHHSQPPPPPIY-EGPLPPIPGI 828

Query: 575 XXXXPPPXP 549
               PPP P
Sbjct: 829 SYASPPPPP 837



 Score = 25.0 bits (52), Expect(2) = 7.3
 Identities = 10/26 (38%), Positives = 10/26 (38%)
 Frame = -2

Query: 941 PPPLGXXPPXXXXXPPXXXKXPPXPP 864
           PPP     P     PP     PP PP
Sbjct: 737 PPPTPIHSPPPQSHPPCIEYSPPPPP 762


>UniRef50_Q5T8P6 Cluster: RNA-binding protein 26; n=31;
           Euteleostomi|Rep: RNA-binding protein 26 - Homo sapiens
           (Human)
          Length = 1007

 Score = 33.9 bits (74), Expect = 9.1
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = -1

Query: 942 PPPPGXXPPPXXXXXPXVXKXPPXP 868
           PPPPG  PPP     P V   PP P
Sbjct: 341 PPPPGLPPPPPILTPPPVNLRPPVP 365


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 563,135,684
Number of Sequences: 1657284
Number of extensions: 7471827
Number of successful extensions: 35617
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25910
length of database: 575,637,011
effective HSP length: 103
effective length of database: 404,936,759
effective search space used: 130794573157
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)