Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_P04
         (1281 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    30   3.1  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    30   3.1  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    30   3.1  
Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    29   9.4  
AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical ...    29   9.4  
AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical ...    29   9.4  
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    29   9.4  

>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = -1

Query: 942 PPPPGXXPPPXXXXXPXVXKXPPXP 868
           PPPPG  PPP     P   K  P P
Sbjct: 762 PPPPGGCPPPPPPPPPGGFKGGPPP 786


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = -1

Query: 942 PPPPGXXPPPXXXXXPXVXKXPPXP 868
           PPPPG  PPP     P   K  P P
Sbjct: 762 PPPPGGCPPPPPPPPPGGFKGGPPP 786


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = -1

Query: 942 PPPPGXXPPPXXXXXPXVXKXPPXP 868
           PPPPG  PPP     P   K  P P
Sbjct: 345 PPPPGGCPPPPPPPPPGGFKGGPPP 369


>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 13/34 (38%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
 Frame = -1

Query: 972 PXXXXXGFFXPPP-PGXXPPPXXXXXPXVXKXPP 874
           P     GF  PPP PG  PPP       +   PP
Sbjct: 66  PPPVPNGFIPPPPGPGGIPPPPPMFAGGIPPPPP 99


>AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical
           protein R148.5b protein.
          Length = 505

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -1

Query: 954 GFFXPPPPGXXPPP 913
           GFF PPP G  PPP
Sbjct: 294 GFFPPPPRGHFPPP 307


>AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical
           protein R148.5a protein.
          Length = 528

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -1

Query: 954 GFFXPPPPGXXPPP 913
           GFF PPP G  PPP
Sbjct: 294 GFFPPPPRGHFPPP 307


>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
            protein F59E12.9 protein.
          Length = 1621

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = -1

Query: 942  PPPPGXXPPPXXXXXPXVXKXPPXP 868
            PPPP   PPP     P     PP P
Sbjct: 1339 PPPPPPPPPPSDDLTPVPPPPPPPP 1363


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,345,373
Number of Sequences: 27780
Number of extensions: 203056
Number of successful extensions: 957
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3579019094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)