Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_P03
         (1297 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1136 + 24218601-24218734,24218769-24219906                       33   0.65 
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    32   0.86 
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076           32   1.1  
07_03_1433 + 26513728-26514135,26525534-26526280                       31   2.6  

>07_03_1136 + 24218601-24218734,24218769-24219906
          Length = 423

 Score = 32.7 bits (71), Expect = 0.65
 Identities = 26/94 (27%), Positives = 26/94 (27%), Gaps = 2/94 (2%)
 Frame = -1

Query: 1291 GXXXPPPXGXXPXPXXXPXX--GXXXXXPPXPXGEXXXXXPXXXXVXXGGXXGGFXGGXP 1118
            G   PP  G    P   P    G     PP P G      P    V  GG  GG     P
Sbjct: 104  GGARPPGGGGGGGPPSLPPGAGGGGGARPPAPGGGGGGGAPRR--VLGGGGGGGALARPP 161

Query: 1117 XXXXXXPXGXPPXXXGXXFXXXXXXGAGPXGXNP 1016
                    G PP   G         G G  G  P
Sbjct: 162  GGGRGGALGRPPGGGGGGGGPGRAPGGGGGGGGP 195


>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
            9435445-9435526,9435610-9435660,9435749-9435829,
            9435965-9436006,9436117-9436215,9438130-9438201,
            9438557-9438680,9438850-9439723,9440274-9440456,
            9440941-9442741,9442825-9443049,9443117-9443814,
            9444519-9444591
          Length = 1541

 Score = 32.3 bits (70), Expect = 0.86
 Identities = 32/133 (24%), Positives = 33/133 (24%), Gaps = 1/133 (0%)
 Frame = -1

Query: 1279 PPPXGXXPXPXXXPXXGXXXXXPPXPXGE-XXXXXPXXXXVXXGGXXGGFXGGXPXXXXX 1103
            PP  G    P   P  G     PP P G       P    +  G   GG     P     
Sbjct: 1101 PPSIGAGAPPPPPPPGGITGVPPPPPIGGLGGHQAPPAPPLPEG--IGGVPPPPPVGGLG 1158

Query: 1102 XPXGXPPXXXGXXFXXXXXXGAGPXGXNPPXPALXXXSGPXXXPLXXXFFPXXSPDXXXX 923
             P   PP               G     PP        GP   P      P   P     
Sbjct: 1159 GPPAPPPPAGFRGGTPPPNAHGGVAPPPPPPRGHGGVGGPPTPPGAPA--PPMPPGVPGG 1216

Query: 922  PXXPXGGXDXPXP 884
            P  P GG   P P
Sbjct: 1217 PPPPPGGRGLPAP 1229


>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
          Length = 906

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 19/52 (36%), Positives = 21/52 (40%)
 Frame = -2

Query: 915 PPLGXXXPLPPXXXPGXXSXXXRXXXXPPXPNXLSPGXXRFXXAGKTSPPSP 760
           PP G   P PP   P   S        PP P+ L PG      AG  +PP P
Sbjct: 278 PPAGPPPPAPPPLPP---SHHHHHGHHPPPPHPLPPGAG--AGAGTGAPPPP 324


>07_03_1433 + 26513728-26514135,26525534-26526280
          Length = 384

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 15/52 (28%), Positives = 18/52 (34%)
 Frame = -2

Query: 915 PPLGXXXPLPPXXXPGXXSXXXRXXXXPPXPNXLSPGXXRFXXAGKTSPPSP 760
           PP     P PP   P            PP P  +SP          T+PP+P
Sbjct: 28  PPTPITYPSPPSLSPSMPPTYPPPSSTPPSPAPVSPSPPTTYPPPSTTPPNP 79


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,141,300
Number of Sequences: 37544
Number of extensions: 429158
Number of successful extensions: 635
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4038959244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)