Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_P01
         (1271 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1645 + 38884606-38884777,38885509-38885567,38885933-388861...    32   1.1  

>01_06_1645 +
           38884606-38884777,38885509-38885567,38885933-38886114,
           38886559-38886634
          Length = 162

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 13/59 (22%), Positives = 31/59 (52%)
 Frame = +2

Query: 275 PEVKRFVMDDAPNYDRVEVKFISGAPXEXILLGEGXH*LERXXLSHLNQEQXNELIQXK 451
           PE+  F+ +D  ++  VE +++ G+P + I+L +     E   + +  +E   + ++ K
Sbjct: 96  PEIVGFLEEDKDDFPYVEARYVYGSPPKLIMLDDKGDQKETIRIDNWKREHIRQFLKEK 154


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,715,224
Number of Sequences: 37544
Number of extensions: 111212
Number of successful extensions: 203
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3945842028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)