Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_O24
(1285 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 35 0.11
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 35 0.11
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 35 0.11
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 35 0.14
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 35 0.14
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 35 0.14
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 34 0.19
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 33 0.58
X64435-1|CAA45773.1| 318|Caenorhabditis elegans collagen protein. 32 0.76
U41624-3|AAF99944.1| 318|Caenorhabditis elegans Dumpy : shorter... 32 0.76
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 31 1.3
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 31 1.3
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 31 1.3
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 31 1.8
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 1.8
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 1.8
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 31 2.3
AL132864-1|CAB63392.1| 613|Caenorhabditis elegans Hypothetical ... 30 3.1
Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical pr... 30 4.1
Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical pr... 30 4.1
Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical pr... 30 4.1
Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical pr... 30 4.1
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 30 4.1
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 30 4.1
U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter... 29 5.4
M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen ... 29 5.4
AC024790-13|AAL32247.1| 311|Caenorhabditis elegans Hypothetical... 29 5.4
AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen prot... 29 7.1
AF016446-2|AAC24165.1| 70|Caenorhabditis elegans Hypothetical ... 29 7.1
U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homolog... 29 9.4
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 29 9.4
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 29 9.4
U14635-8|AAK84492.1| 307|Caenorhabditis elegans Collagen protei... 29 9.4
L15418-1|AAA17445.1| 307|Caenorhabditis elegans col-36 collagen... 29 9.4
AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical... 29 9.4
AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical ... 29 9.4
AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA topoisome... 29 9.4
AF016446-1|AAC24166.1| 66|Caenorhabditis elegans Hypothetical ... 29 9.4
AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin pro... 29 9.4
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 35.1 bits (77), Expect = 0.11
Identities = 19/54 (35%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
Frame = +3
Query: 927 PPGXXXPXXXPGGGXXXXXX--SPPPPPXXXGGXXGGXXPPEXXXXLGPPPXXG 1082
PP P P GG SPPPPP G G PP PP G
Sbjct: 274 PPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTG 327
Score = 31.9 bits (69), Expect = 1.0
Identities = 22/89 (24%), Positives = 28/89 (31%), Gaps = 3/89 (3%)
Frame = +3
Query: 825 GXXXKTXGGXXKXKRGXXXKXXKKFXPXGXKKKXPPGXXXPXXXPGGGXXXXXXSPPPPP 1004
G T G ++G + + G ++ P G P P G PPPP
Sbjct: 199 GNQGVTASGFGGQQQGFGQQQQTQNGFRGKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPP 258
Query: 1005 XXXGG---XXGGXXPPEXXXXLGPPPXXG 1082
G G PP PPP G
Sbjct: 259 PAAGSPPPPRTGSPPPPPTGSPPPPPAGG 287
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 35.1 bits (77), Expect = 0.11
Identities = 19/54 (35%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
Frame = +3
Query: 927 PPGXXXPXXXPGGGXXXXXX--SPPPPPXXXGGXXGGXXPPEXXXXLGPPPXXG 1082
PP P P GG SPPPPP G G PP PP G
Sbjct: 295 PPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTG 348
Score = 31.9 bits (69), Expect = 1.0
Identities = 22/89 (24%), Positives = 28/89 (31%), Gaps = 3/89 (3%)
Frame = +3
Query: 825 GXXXKTXGGXXKXKRGXXXKXXKKFXPXGXKKKXPPGXXXPXXXPGGGXXXXXXSPPPPP 1004
G T G ++G + + G ++ P G P P G PPPP
Sbjct: 220 GNQGVTASGFGGQQQGFGQQQQTQNGFRGKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPP 279
Query: 1005 XXXGG---XXGGXXPPEXXXXLGPPPXXG 1082
G G PP PPP G
Sbjct: 280 PAAGSPPPPRTGSPPPPPTGSPPPPPAGG 308
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 35.1 bits (77), Expect = 0.11
Identities = 19/54 (35%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
Frame = +3
Query: 927 PPGXXXPXXXPGGGXXXXXX--SPPPPPXXXGGXXGGXXPPEXXXXLGPPPXXG 1082
PP P P GG SPPPPP G G PP PP G
Sbjct: 280 PPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTG 333
Score = 31.9 bits (69), Expect = 1.0
Identities = 22/89 (24%), Positives = 28/89 (31%), Gaps = 3/89 (3%)
Frame = +3
Query: 825 GXXXKTXGGXXKXKRGXXXKXXKKFXPXGXKKKXPPGXXXPXXXPGGGXXXXXXSPPPPP 1004
G T G ++G + + G ++ P G P P G PPPP
Sbjct: 205 GNQGVTASGFGGQQQGFGQQQQTQNGFRGKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPP 264
Query: 1005 XXXGG---XXGGXXPPEXXXXLGPPPXXG 1082
G G PP PPP G
Sbjct: 265 PAAGSPPPPRTGSPPPPPTGSPPPPPAGG 293
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 34.7 bits (76), Expect = 0.14
Identities = 16/43 (37%), Positives = 16/43 (37%)
Frame = +3
Query: 945 PXXXPGGGXXXXXXSPPPPPXXXGGXXGGXXPPEXXXXLGPPP 1073
P P GG PPPPP GG PP G PP
Sbjct: 743 PPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPP 785
Score = 34.3 bits (75), Expect = 0.19
Identities = 19/51 (37%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Frame = +3
Query: 927 PP--GXXXPXXXPGGGXXXXXXSPPPPPXXXGGXXGGXXPPEXXXXLGPPP 1073
PP G P PGG PPPPP G PP GPPP
Sbjct: 736 PPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPP 786
Score = 33.9 bits (74), Expect = 0.25
Identities = 19/55 (34%), Positives = 19/55 (34%)
Frame = +3
Query: 903 PXGXKKKXPPGXXXPXXXPGGGXXXXXXSPPPPPXXXGGXXGGXXPPEXXXXLGP 1067
P G G P PGG PPPPP GG GG PP P
Sbjct: 747 PPGGLPPISGGPPPPPPPPGG------CPPPPPPPPPGGFKGGPPPPPPPGMFAP 795
Score = 32.7 bits (71), Expect = 0.58
Identities = 20/60 (33%), Positives = 20/60 (33%), Gaps = 5/60 (8%)
Frame = +3
Query: 909 GXKKKXPPGXXXPXXXPGGGXXXXXXSPPPPPXXXGGXXGGXXPPEXXXXL-----GPPP 1073
G PP P PG PPPPP GG PP L GPPP
Sbjct: 701 GGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPP 760
Score = 30.7 bits (66), Expect = 2.3
Identities = 18/51 (35%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Frame = +3
Query: 927 PP--GXXXPXXXPGGGXXXXXXSPPPPPXXXGGXXGGXXPPEXXXXLGPPP 1073
PP G P PGG PPPPP G PP G PP
Sbjct: 720 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPP 770
Score = 30.3 bits (65), Expect = 3.1
Identities = 26/97 (26%), Positives = 28/97 (28%)
Frame = +1
Query: 538 PXPPXXFXFXGGXXXPGPXGILKXPLXPXPXFXXXXKKTPPFXGPXGXXKXGPXPXGXKX 717
P PP GG P P G L P+ P PP G GP P
Sbjct: 714 PPPPGLPPITGGPPPPPPPGGLP-PITGGPPPPPPPGGLPPISG-------GPPPPPPPP 765
Query: 718 GXXXXXPXKGAPXXXXXKKPPPPKXXKGXPLXXXXXD 828
G P P PPPP P+ D
Sbjct: 766 GGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAPVIPD 802
Score = 29.9 bits (64), Expect = 4.1
Identities = 16/45 (35%), Positives = 18/45 (40%)
Frame = +1
Query: 538 PXPPXXFXFXGGXXXPGPXGILKXPLXPXPXFXXXXKKTPPFXGP 672
P PP F GG P P G+ P+ P KK P GP
Sbjct: 772 PPPPPPGGFKGGPPPPPPPGMFA-PMAPVIPDYLPPKKVPKVDGP 815
Score = 29.5 bits (63), Expect = 5.4
Identities = 23/73 (31%), Positives = 24/73 (32%)
Frame = +3
Query: 450 GGPPXXXXKXGGXXXPXXKTXXXKXXKXLPPPPPXFXFXGGXXXXRPXGXFKKXPXPXPX 629
GGPP GG P PPPPP F GG P G F P
Sbjct: 756 GGPPPPPPPPGGCPPP-------------PPPPPPGGFKGGPPPPPPPGMFAPMAPVIPD 802
Query: 630 FXXXXKKNPPXXG 668
+ KK P G
Sbjct: 803 Y-LPPKKVPKVDG 814
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 34.7 bits (76), Expect = 0.14
Identities = 16/43 (37%), Positives = 16/43 (37%)
Frame = +3
Query: 945 PXXXPGGGXXXXXXSPPPPPXXXGGXXGGXXPPEXXXXLGPPP 1073
P P GG PPPPP GG PP G PP
Sbjct: 743 PPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPP 785
Score = 34.3 bits (75), Expect = 0.19
Identities = 19/51 (37%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Frame = +3
Query: 927 PP--GXXXPXXXPGGGXXXXXXSPPPPPXXXGGXXGGXXPPEXXXXLGPPP 1073
PP G P PGG PPPPP G PP GPPP
Sbjct: 736 PPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPP 786
Score = 33.9 bits (74), Expect = 0.25
Identities = 19/55 (34%), Positives = 19/55 (34%)
Frame = +3
Query: 903 PXGXKKKXPPGXXXPXXXPGGGXXXXXXSPPPPPXXXGGXXGGXXPPEXXXXLGP 1067
P G G P PGG PPPPP GG GG PP P
Sbjct: 747 PPGGLPPISGGPPPPPPPPGG------CPPPPPPPPPGGFKGGPPPPPPPGMFAP 795
Score = 32.7 bits (71), Expect = 0.58
Identities = 20/60 (33%), Positives = 20/60 (33%), Gaps = 5/60 (8%)
Frame = +3
Query: 909 GXKKKXPPGXXXPXXXPGGGXXXXXXSPPPPPXXXGGXXGGXXPPEXXXXL-----GPPP 1073
G PP P PG PPPPP GG PP L GPPP
Sbjct: 701 GGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPP 760
Score = 30.7 bits (66), Expect = 2.3
Identities = 18/51 (35%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Frame = +3
Query: 927 PP--GXXXPXXXPGGGXXXXXXSPPPPPXXXGGXXGGXXPPEXXXXLGPPP 1073
PP G P PGG PPPPP G PP G PP
Sbjct: 720 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPP 770
Score = 30.3 bits (65), Expect = 3.1
Identities = 26/97 (26%), Positives = 28/97 (28%)
Frame = +1
Query: 538 PXPPXXFXFXGGXXXPGPXGILKXPLXPXPXFXXXXKKTPPFXGPXGXXKXGPXPXGXKX 717
P PP GG P P G L P+ P PP G GP P
Sbjct: 714 PPPPGLPPITGGPPPPPPPGGLP-PITGGPPPPPPPGGLPPISG-------GPPPPPPPP 765
Query: 718 GXXXXXPXKGAPXXXXXKKPPPPKXXKGXPLXXXXXD 828
G P P PPPP P+ D
Sbjct: 766 GGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAPVIPD 802
Score = 29.9 bits (64), Expect = 4.1
Identities = 16/45 (35%), Positives = 18/45 (40%)
Frame = +1
Query: 538 PXPPXXFXFXGGXXXPGPXGILKXPLXPXPXFXXXXKKTPPFXGP 672
P PP F GG P P G+ P+ P KK P GP
Sbjct: 772 PPPPPPGGFKGGPPPPPPPGMFA-PMAPVIPDYLPPKKVPKVDGP 815
Score = 29.5 bits (63), Expect = 5.4
Identities = 23/73 (31%), Positives = 24/73 (32%)
Frame = +3
Query: 450 GGPPXXXXKXGGXXXPXXKTXXXKXXKXLPPPPPXFXFXGGXXXXRPXGXFKKXPXPXPX 629
GGPP GG P PPPPP F GG P G F P
Sbjct: 756 GGPPPPPPPPGGCPPP-------------PPPPPPGGFKGGPPPPPPPGMFAPMAPVIPD 802
Query: 630 FXXXXKKNPPXXG 668
+ KK P G
Sbjct: 803 Y-LPPKKVPKVDG 814
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 34.7 bits (76), Expect = 0.14
Identities = 16/43 (37%), Positives = 16/43 (37%)
Frame = +3
Query: 945 PXXXPGGGXXXXXXSPPPPPXXXGGXXGGXXPPEXXXXLGPPP 1073
P P GG PPPPP GG PP G PP
Sbjct: 326 PPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPP 368
Score = 34.3 bits (75), Expect = 0.19
Identities = 19/51 (37%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Frame = +3
Query: 927 PP--GXXXPXXXPGGGXXXXXXSPPPPPXXXGGXXGGXXPPEXXXXLGPPP 1073
PP G P PGG PPPPP G PP GPPP
Sbjct: 319 PPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPP 369
Score = 33.9 bits (74), Expect = 0.25
Identities = 19/55 (34%), Positives = 19/55 (34%)
Frame = +3
Query: 903 PXGXKKKXPPGXXXPXXXPGGGXXXXXXSPPPPPXXXGGXXGGXXPPEXXXXLGP 1067
P G G P PGG PPPPP GG GG PP P
Sbjct: 330 PPGGLPPISGGPPPPPPPPGG------CPPPPPPPPPGGFKGGPPPPPPPGMFAP 378
Score = 32.7 bits (71), Expect = 0.58
Identities = 20/60 (33%), Positives = 20/60 (33%), Gaps = 5/60 (8%)
Frame = +3
Query: 909 GXKKKXPPGXXXPXXXPGGGXXXXXXSPPPPPXXXGGXXGGXXPPEXXXXL-----GPPP 1073
G PP P PG PPPPP GG PP L GPPP
Sbjct: 284 GGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPP 343
Score = 30.7 bits (66), Expect = 2.3
Identities = 18/51 (35%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Frame = +3
Query: 927 PP--GXXXPXXXPGGGXXXXXXSPPPPPXXXGGXXGGXXPPEXXXXLGPPP 1073
PP G P PGG PPPPP G PP G PP
Sbjct: 303 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPP 353
Score = 30.3 bits (65), Expect = 3.1
Identities = 26/97 (26%), Positives = 28/97 (28%)
Frame = +1
Query: 538 PXPPXXFXFXGGXXXPGPXGILKXPLXPXPXFXXXXKKTPPFXGPXGXXKXGPXPXGXKX 717
P PP GG P P G L P+ P PP G GP P
Sbjct: 297 PPPPGLPPITGGPPPPPPPGGLP-PITGGPPPPPPPGGLPPISG-------GPPPPPPPP 348
Query: 718 GXXXXXPXKGAPXXXXXKKPPPPKXXKGXPLXXXXXD 828
G P P PPPP P+ D
Sbjct: 349 GGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAPVIPD 385
Score = 29.9 bits (64), Expect = 4.1
Identities = 16/45 (35%), Positives = 18/45 (40%)
Frame = +1
Query: 538 PXPPXXFXFXGGXXXPGPXGILKXPLXPXPXFXXXXKKTPPFXGP 672
P PP F GG P P G+ P+ P KK P GP
Sbjct: 355 PPPPPPGGFKGGPPPPPPPGMFA-PMAPVIPDYLPPKKVPKVDGP 398
Score = 29.5 bits (63), Expect = 5.4
Identities = 23/73 (31%), Positives = 24/73 (32%)
Frame = +3
Query: 450 GGPPXXXXKXGGXXXPXXKTXXXKXXKXLPPPPPXFXFXGGXXXXRPXGXFKKXPXPXPX 629
GGPP GG P PPPPP F GG P G F P
Sbjct: 339 GGPPPPPPPPGGCPPP-------------PPPPPPGGFKGGPPPPPPPGMFAPMAPVIPD 385
Query: 630 FXXXXKKNPPXXG 668
+ KK P G
Sbjct: 386 Y-LPPKKVPKVDG 397
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 34.3 bits (75), Expect = 0.19
Identities = 23/72 (31%), Positives = 23/72 (31%)
Frame = -2
Query: 1140 PLXPFXXXXKPXQXXFPPXAXKXGGAPXGXXFPGGXTPXXXPXXXXGGGXGXFXXXKXPP 961
P PF P PP GAP PG P P GG G F PP
Sbjct: 406 PPGPFNPSGAPPSGG-PPGPFNPSGAPPSGGPPGPFNPSGAP--PSGGPPGPFNPSGAPP 462
Query: 960 PGXXXGXFXXGG 925
G G F G
Sbjct: 463 SGGPPGPFNPSG 474
Score = 34.3 bits (75), Expect = 0.19
Identities = 23/72 (31%), Positives = 23/72 (31%)
Frame = -2
Query: 1140 PLXPFXXXXKPXQXXFPPXAXKXGGAPXGXXFPGGXTPXXXPXXXXGGGXGXFXXXKXPP 961
P PF P PP GAP PG P P GG G F PP
Sbjct: 436 PPGPFNPSGAPPSGG-PPGPFNPSGAPPSGGPPGPFNPSGAP--PSGGPPGPFDPSGAPP 492
Query: 960 PGXXXGXFXXGG 925
G G F G
Sbjct: 493 SGGPPGPFNPSG 504
Score = 29.1 bits (62), Expect = 7.1
Identities = 19/65 (29%), Positives = 20/65 (30%), Gaps = 8/65 (12%)
Frame = -2
Query: 1095 FPPXAXKXGGAPXGXXFPGGXTPXXXP--------XXXXGGGXGXFXXXKXPPPGXXXGX 940
F P G P G P G P P GG G F + PP G G
Sbjct: 155 FDPSGAPPSGGPPGLFDPSGAPPSGGPPGPFGPSGAPPSGGPPGPFNPSEAPPSGGPTGP 214
Query: 939 FXXGG 925
F G
Sbjct: 215 FDPSG 219
Score = 29.1 bits (62), Expect = 7.1
Identities = 18/57 (31%), Positives = 19/57 (33%)
Frame = -2
Query: 1095 FPPXAXKXGGAPXGXXFPGGXTPXXXPXXXXGGGXGXFXXXKXPPPGXXXGXFXXGG 925
F P + G P G P G P GG G F PP G G F G
Sbjct: 305 FDPSGAQPSGGPPGPFNPSGAPP-------SGGPPGPFDPSGAPPSGGPPGPFNPSG 354
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 32.7 bits (71), Expect = 0.58
Identities = 27/114 (23%), Positives = 32/114 (28%)
Frame = +1
Query: 445 PXGXPPXXGXKXGXXXXPXXKXXXXKXXKXYPXPPXXFXFXGGXXXPGPXGILKXPLXPX 624
P PP G G P + + + PP G P P P
Sbjct: 334 PPQGPPQGGPPQGSFGAPPPQQFHAPSPQSFGGPPPPVSSAPGNFAPPPQSGPPGAFAPP 393
Query: 625 PXFXXXXKKTPPFXGPXGXXKXGPXPXGXKXGXXXXXPXKGAPXXXXXKKPPPP 786
P + GP G GP P G P +G P PPPP
Sbjct: 394 PSAFGAPQ------GPGGPGGYGPPPPGGPGAPGSYGPPQGGPGGFG---PPPP 438
>X64435-1|CAA45773.1| 318|Caenorhabditis elegans collagen protein.
Length = 318
Score = 32.3 bits (70), Expect = 0.76
Identities = 19/56 (33%), Positives = 20/56 (35%)
Frame = +3
Query: 927 PPGXXXPXXXPGGGXXXXXXSPPPPPXXXGGXXGGXXPPEXXXXLGPPPXXGXLGE 1094
PPG P PG S PP P G G PP GPP G G+
Sbjct: 219 PPGPRGPKGPPGSNGLPSQNSGPPGPI---GEMGPPGPPGPRGEPGPPGPFGPPGD 271
>U41624-3|AAF99944.1| 318|Caenorhabditis elegans Dumpy : shorter than
wild-typeprotein 7 protein.
Length = 318
Score = 32.3 bits (70), Expect = 0.76
Identities = 19/56 (33%), Positives = 20/56 (35%)
Frame = +3
Query: 927 PPGXXXPXXXPGGGXXXXXXSPPPPPXXXGGXXGGXXPPEXXXXLGPPPXXGXLGE 1094
PPG P PG S PP P G G PP GPP G G+
Sbjct: 219 PPGPRGPKGPPGSNGLPSQNSGPPGPI---GEMGPPGPPGPRGEPGPPGPFGPPGD 271
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical protein
F23H12.4 protein.
Length = 301
Score = 31.5 bits (68), Expect = 1.3
Identities = 18/54 (33%), Positives = 18/54 (33%)
Frame = +3
Query: 930 PGXXXPXXXPGGGXXXXXXSPPPPPXXXGGXXGGXXPPEXXXXLGPPPXXGXLG 1091
PG P PG PP PP G G PP GPP G G
Sbjct: 223 PGDSGPPGPPGPPGAPGNDGPPGPPGPKGAP-GPDGPPGVDGQSGPPGPPGPAG 275
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 31.5 bits (68), Expect = 1.3
Identities = 18/54 (33%), Positives = 18/54 (33%)
Frame = +3
Query: 930 PGXXXPXXXPGGGXXXXXXSPPPPPXXXGGXXGGXXPPEXXXXLGPPPXXGXLG 1091
PG P PG PP PP G G PP GPP G G
Sbjct: 218 PGDSGPPGPPGPPGAPGNDGPPGPPGPKGAP-GPDGPPGADGQSGPPGPPGPAG 270
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.elegans
(nematode)collagen 1 (col-1) gene, complete cds. ).
Length = 296
Score = 31.5 bits (68), Expect = 1.3
Identities = 18/54 (33%), Positives = 18/54 (33%)
Frame = +3
Query: 930 PGXXXPXXXPGGGXXXXXXSPPPPPXXXGGXXGGXXPPEXXXXLGPPPXXGXLG 1091
PG P PG PP PP G G PP GPP G G
Sbjct: 218 PGDSGPPGPPGPPGAPGNDGPPGPPGPKGAP-GPDGPPGADGQSGPPGPPGPAG 270
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical protein
E02A10.2 protein.
Length = 385
Score = 31.1 bits (67), Expect = 1.8
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +3
Query: 960 GGGXXXXXXSPPPPPXXXGGXXGG 1031
GGG +PPPPP GG GG
Sbjct: 44 GGGGCGGGCAPPPPPPACGGGCGG 67
Score = 31.1 bits (67), Expect = 1.8
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +3
Query: 960 GGGXXXXXXSPPPPPXXXGGXXGG 1031
GGG +PPPPP GG GG
Sbjct: 101 GGGGCGGGCAPPPPPPACGGGCGG 124
Score = 30.3 bits (65), Expect = 3.1
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +3
Query: 960 GGGXXXXXXSPPPPPXXXGGXXGG 1031
GGG PPPPP GG GG
Sbjct: 45 GGGCGGGCAPPPPPPACGGGCGGG 68
Score = 30.3 bits (65), Expect = 3.1
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +3
Query: 960 GGGXXXXXXSPPPPPXXXGGXXGG 1031
GGG PPPPP GG GG
Sbjct: 102 GGGCGGGCAPPPPPPACGGGCGGG 125
Score = 24.6 bits (51), Expect(2) = 8.2
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = -1
Query: 1003 GGGGGXXXXFXXPPPGXXXGXXXPGG 926
GGGGG PPP G GG
Sbjct: 100 GGGGGCGGGCAPPPPPPACGGGCGGG 125
Score = 22.6 bits (46), Expect(2) = 8.2
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = -1
Query: 1042 GGXXPPXXPPXXXGGGGG 989
GG P PP GGG G
Sbjct: 49 GGGCAPPPPPPACGGGCG 66
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical protein
C08B11.5 protein.
Length = 388
Score = 31.1 bits (67), Expect = 1.8
Identities = 18/63 (28%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
Frame = +3
Query: 903 PXGXKKKXPPGXXX-PXXXPGGGXXXXXXSPPPPPXXXGGXXGGXXPPEXXXXLGPPPXX 1079
P + PPG P P G PPPPP G PP PP
Sbjct: 319 PPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSGH 378
Query: 1080 GXL 1088
G +
Sbjct: 379 GMI 381
Score = 29.5 bits (63), Expect = 5.4
Identities = 17/54 (31%), Positives = 17/54 (31%), Gaps = 2/54 (3%)
Frame = +3
Query: 927 PPGXXXPXXXPGGGXXXXXXSPPPPPXXXGGXXG--GXXPPEXXXXLGPPPXXG 1082
P P P PPPPP G G G PP GPP G
Sbjct: 279 PTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGG 332
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA binding
protein protein.
Length = 398
Score = 31.1 bits (67), Expect = 1.8
Identities = 18/63 (28%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
Frame = +3
Query: 903 PXGXKKKXPPGXXX-PXXXPGGGXXXXXXSPPPPPXXXGGXXGGXXPPEXXXXLGPPPXX 1079
P + PPG P P G PPPPP G PP PP
Sbjct: 329 PPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSGH 388
Query: 1080 GXL 1088
G +
Sbjct: 389 GMI 391
Score = 29.5 bits (63), Expect = 5.4
Identities = 17/54 (31%), Positives = 17/54 (31%), Gaps = 2/54 (3%)
Frame = +3
Query: 927 PPGXXXPXXXPGGGXXXXXXSPPPPPXXXGGXXG--GXXPPEXXXXLGPPPXXG 1082
P P P PPPPP G G G PP GPP G
Sbjct: 289 PTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGG 342
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 30.7 bits (66), Expect = 2.3
Identities = 29/113 (25%), Positives = 30/113 (26%)
Frame = +1
Query: 694 PXPXGXKXGXXXXXPXKGAPXXXXXKKPPPPKXXKGXPLXXXXXDXXKKXXGVX*XXKGG 873
P P G G G P PPP G P D G + G
Sbjct: 183 PGPPGPD-GNAGPAGAPGVPGPDGDAGSPPPPGPPGPP-GPPGNDGQPGAPGQD--GQPG 238
Query: 874 XXXNXXKNXPPGGXKKXPPXGKXPPXXTRGGGFXXXKXPXPPPXXXXGGXXGG 1032
N P G PP PP GG P PP G GG
Sbjct: 239 APGTNTVNSPGGPGPAGPPGPPGPPGQDGSGGAAQPGPPGPPGPPGNDGQPGG 291
Score = 29.5 bits (63), Expect = 5.4
Identities = 18/57 (31%), Positives = 18/57 (31%), Gaps = 1/57 (1%)
Frame = +3
Query: 903 PXGXKKKXPPGXXXPXXXPGGGXXXXXXSPPPP-PXXXGGXXGGXXPPEXXXXLGPP 1070
P G PPG P G G P PP P G GG P G P
Sbjct: 248 PGGPGPAGPPGPPGPPGQDGSGGAAQPGPPGPPGPPGNDGQPGGPGQPGGPGQDGGP 304
>AL132864-1|CAB63392.1| 613|Caenorhabditis elegans Hypothetical
protein Y53H1A.1 protein.
Length = 613
Score = 30.3 bits (65), Expect = 3.1
Identities = 15/50 (30%), Positives = 16/50 (32%)
Frame = +3
Query: 921 KXPPGXXXPXXXPGGGXXXXXXSPPPPPXXXGGXXGGXXPPEXXXXLGPP 1070
+ PPG P P PPPP G PP GPP
Sbjct: 76 RGPPGPSGPSGPPVYHNQGPPRGYPPPPPQGADTWRGAPPPAHHGHFGPP 125
>Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical protein
H06A10.2 protein.
Length = 305
Score = 29.9 bits (64), Expect = 4.1
Identities = 21/67 (31%), Positives = 22/67 (32%), Gaps = 2/67 (2%)
Frame = +3
Query: 903 PXGXKKKXPPGXXXPXXXPGGGXXXXXXS--PPPPPXXXGGXXGGXXPPEXXXXLGPPPX 1076
P G PPG P G + PP PP G G P GPP
Sbjct: 222 PAGPGPAGPPGPAGPPGPDGASPTAAPGAAGPPGPP----GPAGAPGPDGNPGTAGPPGK 277
Query: 1077 XGXLGEK 1097
G GEK
Sbjct: 278 AGGEGEK 284
>Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical protein
ZK863.2 protein.
Length = 330
Score = 29.9 bits (64), Expect = 4.1
Identities = 17/50 (34%), Positives = 17/50 (34%), Gaps = 2/50 (4%)
Frame = +3
Query: 927 PPGXXXPXXXPGGGXXXXXXSP--PPPPXXXGGXXGGXXPPEXXXXLGPP 1070
PPG P PGGG P PP P G G P G P
Sbjct: 179 PPGPPGPDGAPGGGSGPGPAGPAGPPGPDGNPGSAGADGQPGGPGQDGAP 228
>Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical protein
T21B4.2 protein.
Length = 312
Score = 29.9 bits (64), Expect = 4.1
Identities = 16/56 (28%), Positives = 17/56 (30%)
Frame = +3
Query: 927 PPGXXXPXXXPGGGXXXXXXSPPPPPXXXGGXXGGXXPPEXXXXLGPPPXXGXLGE 1094
PPG P PG P P G PP GPP G G+
Sbjct: 203 PPGPPGPPGGPGNDGQPGGPGNPGAPGAVTEVPGQQGPPGPPGPAGPPGPAGNAGQ 258
>Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical protein
ZK863.2 protein.
Length = 330
Score = 29.9 bits (64), Expect = 4.1
Identities = 17/50 (34%), Positives = 17/50 (34%), Gaps = 2/50 (4%)
Frame = +3
Query: 927 PPGXXXPXXXPGGGXXXXXXSP--PPPPXXXGGXXGGXXPPEXXXXLGPP 1070
PPG P PGGG P PP P G G P G P
Sbjct: 179 PPGPPGPDGAPGGGSGPGPAGPAGPPGPDGNPGSAGADGQPGGPGQDGAP 228
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical protein
T24B8.4 protein.
Length = 866
Score = 29.9 bits (64), Expect = 4.1
Identities = 20/55 (36%), Positives = 20/55 (36%), Gaps = 6/55 (10%)
Frame = +3
Query: 927 PPGXXXPXXXPGGGXXXXXXSPPPPPXXXGG------XXGGXXPPEXXXXLGPPP 1073
P G P PGG PPPPP GG GG PP PPP
Sbjct: 70 PNGFIPPPPGPGG-------IPPPPPMFAGGIPPPPPMMGGIPPPPPMFGAPPPP 117
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical protein
B0280.13 protein.
Length = 616
Score = 29.9 bits (64), Expect = 4.1
Identities = 17/57 (29%), Positives = 17/57 (29%)
Frame = +3
Query: 903 PXGXKKKXPPGXXXPXXXPGGGXXXXXXSPPPPPXXXGGXXGGXXPPEXXXXLGPPP 1073
P K PP P P SPPPPP PP PPP
Sbjct: 467 PTTPKPAPPPPSRIPNPSPSPQPAEVSKSPPPPPPLPPIATPSSVPPPPPPPPPPPP 523
>U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter than
wild-typeprotein 3 protein.
Length = 302
Score = 29.5 bits (63), Expect = 5.4
Identities = 19/58 (32%), Positives = 19/58 (32%), Gaps = 2/58 (3%)
Frame = +3
Query: 930 PGXXXPXXXPGGGXXXXXXSPPPPPXXXG--GXXGGXXPPEXXXXLGPPPXXGXLGEK 1097
PG P PG PP PP G G G GPP G GEK
Sbjct: 206 PGEKGPTGEPGKVINGAPPGPPGPPGPPGPQGPPGPPGKDGQPGKAGPPGLPGDPGEK 263
>M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen
protein.
Length = 298
Score = 29.5 bits (63), Expect = 5.4
Identities = 25/91 (27%), Positives = 25/91 (27%), Gaps = 1/91 (1%)
Frame = +1
Query: 538 PXPPXXFXFXGGXXXPGPXGILKXPLXPX-PXFXXXXKKTPPFXGPXGXXKXGPXPXGXK 714
P PP G PG G P P P TPP P GP
Sbjct: 102 PGPPGPAGTPGKPGRPGKPGAPGLPGNPGRPPQQPCEPITPPPWKPCPQGPPGPPGPPGP 161
Query: 715 XGXXXXXPXKGAPXXXXXKKPPPPKXXKGXP 807
G G P P PK KG P
Sbjct: 162 PGDSGEPGSPGLPGQDAAPGEPGPKGPKGPP 192
>AC024790-13|AAL32247.1| 311|Caenorhabditis elegans Hypothetical
protein Y47D7A.13 protein.
Length = 311
Score = 29.5 bits (63), Expect = 5.4
Identities = 15/41 (36%), Positives = 16/41 (39%)
Frame = +3
Query: 960 GGGXXXXXXSPPPPPXXXGGXXGGXXPPEXXXXLGPPPXXG 1082
GGG PPPPP GG GG P + P G
Sbjct: 22 GGGGGGCCAPPPPPP--CGGGCGGGAPAAGGYAVAPQAPIG 60
>AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen protein
68 protein.
Length = 329
Score = 29.1 bits (62), Expect = 7.1
Identities = 19/66 (28%), Positives = 20/66 (30%), Gaps = 3/66 (4%)
Frame = +3
Query: 903 PXGXKKKXPPGXXXPXXXPGGGXXXXXXSPPPPP---XXXGGXXGGXXPPEXXXXLGPPP 1073
P G PPG P PG P P G G PP +GPP
Sbjct: 212 PGGNALPGPPGPPGPQGPPGADGLPGNPGAPGVPGQVIEVPGTPGPAGPPGPPGPIGPPG 271
Query: 1074 XXGXLG 1091
G G
Sbjct: 272 QPGAPG 277
>AF016446-2|AAC24165.1| 70|Caenorhabditis elegans Hypothetical
protein C02E7.6 protein.
Length = 70
Score = 29.1 bits (62), Expect = 7.1
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +3
Query: 957 PGGGXXXXXXSPPPPPXXXGGXXGGXXPP 1043
P GG +PPPPP G GG PP
Sbjct: 20 PSGGGGGCGCAPPPPPAC--GCGGGAAPP 46
>U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homology
domain protein 1 protein.
Length = 1346
Score = 28.7 bits (61), Expect = 9.4
Identities = 16/46 (34%), Positives = 17/46 (36%), Gaps = 4/46 (8%)
Frame = +3
Query: 963 GGXXXXXXSPPPPPXXX----GGXXGGXXPPEXXXXLGPPPXXGXL 1088
GG PPPPP GG PP + PPP G L
Sbjct: 762 GGPVGVGVPPPPPPPSAIPLPPRLQGGIPPPPPLGIIPPPPPPGNL 807
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 28.7 bits (61), Expect = 9.4
Identities = 13/39 (33%), Positives = 13/39 (33%)
Frame = +3
Query: 903 PXGXKKKXPPGXXXPXXXPGGGXXXXXXSPPPPPXXXGG 1019
P PP P P G PPPPP GG
Sbjct: 624 PISSAAPPPPPPPPPMGLPAVGAGAPPPPPPPPPSGAGG 662
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 28.7 bits (61), Expect = 9.4
Identities = 13/39 (33%), Positives = 13/39 (33%)
Frame = +3
Query: 903 PXGXKKKXPPGXXXPXXXPGGGXXXXXXSPPPPPXXXGG 1019
P PP P P G PPPPP GG
Sbjct: 450 PISSAAPPPPPPPPPMGLPAVGAGAPPPPPPPPPSGAGG 488
>U14635-8|AAK84492.1| 307|Caenorhabditis elegans Collagen protein 36
protein.
Length = 307
Score = 28.7 bits (61), Expect = 9.4
Identities = 19/55 (34%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Frame = +3
Query: 921 KXPPGXXXPXXXPG-GGXXXXXXSPPPPPXXXGGXXGGXXPPEXXXXLGPPPXXG 1082
K PPG P PG G PP G GG PP GPP G
Sbjct: 242 KGPPG---PKGLPGIAGLTEIGGQGPPGDAGGPGPVGGQGPPGPQGPQGPPGDEG 293
>L15418-1|AAA17445.1| 307|Caenorhabditis elegans col-36 collagen
protein.
Length = 307
Score = 28.7 bits (61), Expect = 9.4
Identities = 19/55 (34%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Frame = +3
Query: 921 KXPPGXXXPXXXPG-GGXXXXXXSPPPPPXXXGGXXGGXXPPEXXXXLGPPPXXG 1082
K PPG P PG G PP G GG PP GPP G
Sbjct: 242 KGPPG---PKGLPGIAGLTEIGGQGPPGDAGGPGPVGGQGPPGPQGPQGPPGDEG 293
>AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical
protein Y56A3A.27 protein.
Length = 759
Score = 28.7 bits (61), Expect = 9.4
Identities = 18/52 (34%), Positives = 18/52 (34%)
Frame = +1
Query: 892 KNXPPGGXKKXPPXGKXPPXXTRGGGFXXXKXPXPPPXXXXGGXXGGXXPRK 1047
KN GG P G PP GGG P PP G PRK
Sbjct: 610 KNNQAGGGPGGPGGGGGPPRGPGGGGGGGPTGPPAPPKPP--AKPRGRPPRK 659
>AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical
protein C24F3.6 protein.
Length = 291
Score = 28.7 bits (61), Expect = 9.4
Identities = 19/61 (31%), Positives = 19/61 (31%), Gaps = 2/61 (3%)
Frame = +3
Query: 918 KKXPPGXXXPXXXPGGGXXXXXXSPPPPPXXXG--GXXGGXXPPEXXXXLGPPPXXGXLG 1091
K P G P PG PP PP G G G P G P G G
Sbjct: 138 KPCPEGPPGPAGPPGPDGNKGPLGPPGPPGPEGPNGEPGNKGPAGPPGPGGKPGPAGPPG 197
Query: 1092 E 1094
E
Sbjct: 198 E 198
>AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA topoisomerase
III protein.
Length = 759
Score = 28.7 bits (61), Expect = 9.4
Identities = 18/52 (34%), Positives = 18/52 (34%)
Frame = +1
Query: 892 KNXPPGGXKKXPPXGKXPPXXTRGGGFXXXKXPXPPPXXXXGGXXGGXXPRK 1047
KN GG P G PP GGG P PP G PRK
Sbjct: 610 KNNQAGGGPGGPGGGGGPPRGPGGGGGGGPTGPPAPPKPP--AKPRGRPPRK 659
>AF016446-1|AAC24166.1| 66|Caenorhabditis elegans Hypothetical
protein C02E7.7 protein.
Length = 66
Score = 28.7 bits (61), Expect = 9.4
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +3
Query: 960 GGGXXXXXXSPPPPPXXXGGXXGGXXPP 1043
GGG PPPP GG GG P
Sbjct: 23 GGGGCGCAPPPPPPACGCGGGGGGYAAP 50
>AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin protein.
Length = 1346
Score = 28.7 bits (61), Expect = 9.4
Identities = 16/46 (34%), Positives = 17/46 (36%), Gaps = 4/46 (8%)
Frame = +3
Query: 963 GGXXXXXXSPPPPPXXX----GGXXGGXXPPEXXXXLGPPPXXGXL 1088
GG PPPPP GG PP + PPP G L
Sbjct: 762 GGPVGVGVPPPPPPPSAIPLPPRLQGGIPPPPPLGIIPPPPPPGNL 807
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,435,998
Number of Sequences: 27780
Number of extensions: 370891
Number of successful extensions: 1687
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1246
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3589453552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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