Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_O22
(1305 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 355 6e-99
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 355 8e-99
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 355 8e-99
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 179 7e-46
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 173 3e-44
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 95 2e-20
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 46 2e-05
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 40 8e-04
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 38 0.004
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb... 36 0.016
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 32 0.15
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 29 1.1
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 27 5.7
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 27 7.5
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 355 bits (874), Expect = 6e-99
Identities = 177/273 (64%), Positives = 196/273 (71%)
Frame = +2
Query: 113 MGKEXXXXXXXXXXXXXSGKSTXXGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 292
MGKE SGKST GHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 293 DKLKAERERGITIDIALWKFETSKYYVTIIDALGHRDFIKNMITGTSQADCAVLIVAAGT 472
DKLKAERERGITIDIALWKFET KY VT+IDA GHRDFIKNMITGTSQADCAVLI+ GT
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGT 120
Query: 473 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKK 652
GEFEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T +S+ RFEEI KE S++IKK
Sbjct: 121 GEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTT--GWSQARFEEIVKETSNFIKK 178
Query: 653 IGXXPXXVXFVPISGWXGXXMLEPSXKMPWFKGWXVERKEGKXXGKXLIEXLXXXXXXXR 832
+G P V FVP+SG+ G M+EP+ MPW++GW E K G GK L+E + R
Sbjct: 179 VGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLEAIDSIEPPAR 238
Query: 833 XXXXXXXXXXXXVXKXXGIGXVXVXXXXXGVXK 931
V K GIG V V GV K
Sbjct: 239 PTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIK 271
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 355 bits (873), Expect = 8e-99
Identities = 176/273 (64%), Positives = 196/273 (71%)
Frame = +2
Query: 113 MGKEXXXXXXXXXXXXXSGKSTXXGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 292
MGKE SGKST GHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 293 DKLKAERERGITIDIALWKFETSKYYVTIIDALGHRDFIKNMITGTSQADCAVLIVAAGT 472
DKLKAERERGITIDIALWKFET KY VT+IDA GHRDFIKNMITGTSQADCA+LI+ GT
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGT 120
Query: 473 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKK 652
GEFEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T +S+ RFEEI KE S++IKK
Sbjct: 121 GEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTT--GWSQARFEEIVKETSNFIKK 178
Query: 653 IGXXPXXVXFVPISGWXGXXMLEPSXKMPWFKGWXVERKEGKXXGKXLIEXLXXXXXXXR 832
+G P V FVP+SG+ G M+EP+ MPW++GW E K G GK L+E + R
Sbjct: 179 VGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLEAIDSIEPPAR 238
Query: 833 XXXXXXXXXXXXVXKXXGIGXVXVXXXXXGVXK 931
V K GIG V V GV K
Sbjct: 239 PTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIK 271
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 355 bits (873), Expect = 8e-99
Identities = 176/273 (64%), Positives = 196/273 (71%)
Frame = +2
Query: 113 MGKEXXXXXXXXXXXXXSGKSTXXGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 292
MGKE SGKST GHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 293 DKLKAERERGITIDIALWKFETSKYYVTIIDALGHRDFIKNMITGTSQADCAVLIVAAGT 472
DKLKAERERGITIDIALWKFET KY VT+IDA GHRDFIKNMITGTSQADCA+LI+ GT
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGT 120
Query: 473 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKK 652
GEFEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T +S+ RFEEI KE S++IKK
Sbjct: 121 GEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTT--GWSQARFEEIVKETSNFIKK 178
Query: 653 IGXXPXXVXFVPISGWXGXXMLEPSXKMPWFKGWXVERKEGKXXGKXLIEXLXXXXXXXR 832
+G P V FVP+SG+ G M+EP+ MPW++GW E K G GK L+E + R
Sbjct: 179 VGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLEAIDSIEPPAR 238
Query: 833 XXXXXXXXXXXXVXKXXGIGXVXVXXXXXGVXK 931
V K GIG V V GV K
Sbjct: 239 PTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIK 271
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 179 bits (436), Expect = 7e-46
Identities = 93/199 (46%), Positives = 123/199 (61%), Gaps = 3/199 (1%)
Frame = +2
Query: 164 SGKSTXXGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIAL 343
SGKST G ++++ G I+ R+++K EA GKGSF YAW+LD + ER RG+T+D+A
Sbjct: 188 SGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVAS 247
Query: 344 WKFETSKYYVTIIDALGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHA 523
FE+ K I DA GHRDFI MI G S AD AVL+V + FE G +NGQTREHA
Sbjct: 248 TTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHA 307
Query: 524 LLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSY-IKKIGXXPXXVXFVPISGW 700
L LG+ +++V VNK+D +SE RF+EIK VS + IK +G V FVPIS
Sbjct: 308 YLLRALGISEIVVSVNKLDLMS--WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAI 365
Query: 701 XGXXML--EPSXKMPWFKG 751
G ++ + S W+KG
Sbjct: 366 SGTNLIQKDSSDLYKWYKG 384
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 173 bits (422), Expect = 3e-44
Identities = 81/200 (40%), Positives = 128/200 (64%), Gaps = 4/200 (2%)
Frame = +2
Query: 164 SGKSTXXGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIAL 343
+GKST G++++ G +DKRT+EK E+EA+E GK S+ +W LD ERE+G T+++
Sbjct: 249 AGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGR 308
Query: 344 WKFETSKYYVTIIDALGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHA 523
FET +++DA GH+ ++ NMI G SQAD VL+++A GEFEAG + GQTREHA
Sbjct: 309 AYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHA 368
Query: 524 LLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIG--XXPXXVXFVPISG 697
+LA T G+ L+V +NKMD +SE R++E ++S +++++ V ++P+S
Sbjct: 369 VLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSA 428
Query: 698 WXGXXMLE--PSXKMPWFKG 751
+ G + + S PW++G
Sbjct: 429 YTGQNVKDRVDSSVCPWYQG 448
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 95.1 bits (226), Expect = 2e-20
Identities = 52/130 (40%), Positives = 78/130 (60%)
Frame = +2
Query: 254 EMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDALGHRDFIKNMITGTS 433
++G+ SF +DK E+ RGITI A ++ET+ + +D GH D+IKNMITG +
Sbjct: 79 DLGQASFMDYSQIDKAPEEKARGITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAA 138
Query: 434 QADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRF 613
D A+++V+A G+ QTREH LLA +GVKQ++V +NK+D EP E
Sbjct: 139 TMDGAIIVVSATDGQMP-------QTREHLLLARQVGVKQIVVYINKVDMVEPDMIELVE 191
Query: 614 EEIKKEVSSY 643
E+++ +S Y
Sbjct: 192 MEMRELLSEY 201
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 45.6 bits (103), Expect = 2e-05
Identities = 35/98 (35%), Positives = 49/98 (50%)
Frame = +2
Query: 287 VLDKLKAERERGITIDIALWKFETSKYYVTIIDALGHRDFIKNMITGTSQADCAVLIVAA 466
V+D L AER+RGITI+ A F + +ID GH DF + + D AV I+
Sbjct: 67 VMDYLPAERQRGITINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAII-- 124
Query: 467 GTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 580
+ AG+ QT+ A G+ ++I VNKMD
Sbjct: 125 ---DGSAGV--EAQTKVVWKQATKRGIPKVIF-VNKMD 156
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 39.9 bits (89), Expect = 8e-04
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Frame = +2
Query: 290 LDKLKAERERGITIDI----ALWKFETSKYYVTIIDALGHRDFIKNMITGTSQADCAVLI 457
LDKL+ ER RGIT+ ++ + Y + +ID GH DF ++ + + +L+
Sbjct: 95 LDKLEVERRRGITVKAQTCSMIYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILL 154
Query: 458 VAAGTG 475
V A G
Sbjct: 155 VDASQG 160
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 37.5 bits (83), Expect = 0.004
Identities = 22/93 (23%), Positives = 41/93 (44%)
Frame = +2
Query: 368 YVTIIDALGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 547
+V+ +D GH + M+ G + D A+L++A QT EH + +
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQL 162
Query: 548 KQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYI 646
K +I+ NK+D +E ++ I K + +
Sbjct: 163 KHIIILQNKVDLIRESAAEEHYQSILKFIKGTV 195
>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 695
Score = 35.5 bits (78), Expect = 0.016
Identities = 49/202 (24%), Positives = 77/202 (38%), Gaps = 7/202 (3%)
Frame = +2
Query: 164 SGKSTXXGHLIYKCGGIDKRTIEKF-----EKEAQEMGKGSFKYAWVLDKLKAERERGIT 328
SGK T L ++ G D +T++K +KE+ S K W + +
Sbjct: 291 SGKKTLLSRLFFQIGSFDPKTMQKCTVLNAKKESLSSVLKSTKTKWYDFETFSNSYSSTI 350
Query: 329 IDIALWKFETSKYYVTIIDALGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 508
ID L F T+ + + L H + M T DC + E GIS Q
Sbjct: 351 IDFPLGIFTTNAS--SRDNFLKHSSLFQVMNTAIFTIDCLNPL------EGLDGISSILQ 402
Query: 509 TREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGXXPXXVXFVP 688
L L + + + KMD E + E +F + + S++K+ F+P
Sbjct: 403 ------LMNGLSISSYMFAITKMDEIE--WDENKFINLVNSIQSFLKESCGIIEKSKFIP 454
Query: 689 ISGWXGXXMLEPSXK--MPWFK 748
ISG G + S + W+K
Sbjct: 455 ISGLKGTNLTSISQEKLSQWYK 476
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 32.3 bits (70), Expect = 0.15
Identities = 40/138 (28%), Positives = 59/138 (42%), Gaps = 19/138 (13%)
Frame = +2
Query: 164 SGKSTXXGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIAL 343
SGK+T ++Y G I K+ E+ +G +D ++ ERE+GITI A
Sbjct: 70 SGKTTFTERVLYYTGRI---------KDIHEV-RGKDNVGAKMDFMELEREKGITIQSAA 119
Query: 344 ----WK---------------FETSKYYVTIIDALGHRDFIKNMITGTSQADCAVLIVAA 466
W+ FE S Y + IID GH DF + D AVL++ A
Sbjct: 120 THCTWERTVDQIEANEKQKTDFEKS-YNINIIDTPGHIDFTIEVERALRVLDGAVLVLCA 178
Query: 467 GTGEFEAGISKNGQTREH 520
+G I+ + Q R +
Sbjct: 179 VSGVQSQTITVDRQMRRY 196
>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 29.5 bits (63), Expect = 1.1
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -1
Query: 330 IVIPRSRSAFSLSNTQAYLKDPLPISWASFSNFSMVRLSIPPH 202
I IP+ A S+ N++ + +D LP + S V+L +P H
Sbjct: 171 IPIPKKNPARSVCNSKLFNEDTLPAEFEEVSISPPVKLELPTH 213
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 27.1 bits (57), Expect = 5.7
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -2
Query: 299 VCPIPKHI*RILYPFPGPPSRTSRWYVCQYHHICRSNDXXWWT 171
V +PK I I++ F P S S C+Y S+D W T
Sbjct: 31 VLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSWRT 73
>SPCC63.03 |||DNAJ domain protein, DNAJC11
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 642
Score = 26.6 bits (56), Expect = 7.5
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -1
Query: 354 SNFQRAISIVIPRSRSAFSLSNTQAYLKDPLPISWASFSNFSMV 223
S F IS+ +P FSL+ ++ K LPI W S + S V
Sbjct: 403 STFGVNISVGVPTGSITFSLNWSRLGQKISLPIMWCSVFDRSAV 446
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,048,284
Number of Sequences: 5004
Number of extensions: 56553
Number of successful extensions: 141
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 713396902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -