Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_O22
         (1305 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   419   e-119
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   407   e-115
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...   336   2e-94
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...   294   1e-81
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    31   0.017

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  419 bits (1033), Expect = e-119
 Identities = 211/273 (77%), Positives = 211/273 (77%)
 Frame = +2

Query: 113 MGKEXXXXXXXXXXXXXSGKSTXXGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 292
           MGKE             SGKST  GHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60

Query: 293 DKLKAERERGITIDIALWKFETSKYYVTIIDALGHRDFIKNMITGTSQADCAVLIVAAGT 472
           DKLKAERERGITIDIALWKFETSKYYVTIIDA GHRDFIKNMITGTSQADCAVLIVAAGT
Sbjct: 61  DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 120

Query: 473 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKK 652
           GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE RFEEIKKEVSSYIKK
Sbjct: 121 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKK 180

Query: 653 IGXXPXXVXFVPISGWXGXXMLEPSXKMPWFKGWXVERKEGKXXGKXLIEXLXXXXXXXR 832
           IG  P  V FVPISGW G  MLE S KMPWFKGW VERKEGK  GK LIE L       R
Sbjct: 181 IGYNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERKEGKVEGKCLIEALDAILPPTR 240

Query: 833 XXXXXXXXXXXXVXKXXGIGXVXVXXXXXGVXK 931
                       V K  GIG V V     GV K
Sbjct: 241 PTDKALRLPLQDVYKIGGIGTVPVGRVETGVLK 273


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  407 bits (1001), Expect = e-115
 Identities = 203/278 (73%), Positives = 209/278 (75%)
 Frame = +2

Query: 113 MGKEXXXXXXXXXXXXXSGKSTXXGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 292
           MGKE             SGKST  GHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60

Query: 293 DKLKAERERGITIDIALWKFETSKYYVTIIDALGHRDFIKNMITGTSQADCAVLIVAAGT 472
           DKLKAERERGITIDIALWKFET+KYYVTIIDA GHRDFIKNMITGTSQADCAVLIVAAG 
Sbjct: 61  DKLKAERERGITIDIALWKFETAKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGI 120

Query: 473 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKK 652
           GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD T+PPYSE RFEEIKKEVSSYIKK
Sbjct: 121 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDMTDPPYSEARFEEIKKEVSSYIKK 180

Query: 653 IGXXPXXVXFVPISGWXGXXMLEPSXKMPWFKGWXVERKEGKXXGKXLIEXLXXXXXXXR 832
           IG     V FVPISGW G  MLEPS K PW+KGW VERK+G   GK LIE L       R
Sbjct: 181 IGYNTASVAFVPISGWHGDNMLEPSPKTPWYKGWKVERKDGNADGKTLIEALDAILPPSR 240

Query: 833 XXXXXXXXXXXXVXKXXGIGXVXVXXXXXGVXKXXXLL 946
                       V K  GIG V V     G+ K   L+
Sbjct: 241 PTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGMLV 278


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score =  336 bits (826), Expect = 2e-94
 Identities = 169/216 (78%), Positives = 169/216 (78%)
 Frame = +2

Query: 284 WVLDKLKAERERGITIDIALWKFETSKYYVTIIDALGHRDFIKNMITGTSQADCAVLIVA 463
           WVLDKLKAERERGITIDIALWKFETSKYYVTIIDA GHRDFIKNMITGTSQADCAVLIVA
Sbjct: 1   WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 60

Query: 464 AGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSY 643
           AGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE RFEEIKKEVSSY
Sbjct: 61  AGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSY 120

Query: 644 IKKIGXXPXXVXFVPISGWXGXXMLEPSXKMPWFKGWXVERKEGKXXGKXLIEXLXXXXX 823
           IKKIG  P  V FVPISGW G  MLE S KMPWFKGW VERKEGK  GK LIE L     
Sbjct: 121 IKKIGYNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERKEGKVEGKCLIEALDAILP 180

Query: 824 XXRXXXXXXXXXXXXVXKXXGIGXVXVXXXXXGVXK 931
             R            V K  GIG V V     GV K
Sbjct: 181 PTRPTDKALRLPLQDVYKIGGIGTVPVGRVETGVLK 216


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score =  294 bits (721), Expect = 1e-81
 Identities = 142/159 (89%), Positives = 142/159 (89%)
 Frame = +2

Query: 332 DIALWKFETSKYYVTIIDALGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 511
           DIALWKFETSKYYVTIIDA GHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT
Sbjct: 1   DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 60

Query: 512 REHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGXXPXXVXFVPI 691
           REHALLAFTLGVKQLIVGVNKMDSTEPPYSE RFEEIKKEVSSYIKKIG  P  V FVPI
Sbjct: 61  REHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAVAFVPI 120

Query: 692 SGWXGXXMLEPSXKMPWFKGWXVERKEGKXXGKXLIEXL 808
           SGW G  MLE S KMPWFKGW VERKEGK  GK LIE L
Sbjct: 121 SGWHGDNMLEVSSKMPWFKGWTVERKEGKVEGKCLIEAL 159


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 31.5 bits (68), Expect = 0.017
 Identities = 31/109 (28%), Positives = 46/109 (42%)
 Frame = +2

Query: 371 VTIIDALGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 550
           VT +D  GH  FI     G    D  VL+VAA  G  E       QT +   +A    V 
Sbjct: 195 VTFLDTPGHAAFISMRHRGAHITDIVVLVVAADDGVKE-------QTLQSIEMAKDAKV- 246

Query: 551 QLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGXXPXXVXFVPISG 697
            +IV +NK+D       + ++E  K  +   I+++G     V    + G
Sbjct: 247 PIIVAINKIDKPNIDIIKVQYELAKHGI--VIEELGGEIQCVKISALKG 293


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,712
Number of Sequences: 438
Number of extensions: 3942
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 44903562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)