Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_O19
         (1313 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.20 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   3.3  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    23   6.4  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.9 bits (69), Expect = 0.20
 Identities = 21/71 (29%), Positives = 22/71 (30%)
 Frame = -1

Query: 662 PPPPPXGGXXXPXXXPXXXXXXXGXXXGGXQXXXXPPPPRGXGXXXXXKKXXXPPPPPXX 483
           PPPPP      P   P           G       PPPP   G          PPPP   
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGG------PPPPPPPPGVAGAGPPPPPPPPPAVS 786

Query: 482 XTSNRXXAPXP 450
              +R  AP P
Sbjct: 787 AGGSRYYAPAP 797



 Score = 29.1 bits (62), Expect = 1.4
 Identities = 19/51 (37%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
 Frame = -2

Query: 514 KXXXPPPPX--XXXPATAXXPXXXXRPXXGGGXXXXXPPXPPQKKTFYPPP 368
           K   PPPP      PA A  P     P  GG      PP PP      PPP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGG---PPPPPPPPGVAGAGPPP 777



 Score = 28.7 bits (61), Expect = 1.9
 Identities = 13/38 (34%), Positives = 13/38 (34%)
 Frame = -1

Query: 752 PPPXXXXXXXGXGXXXXXXXXPPRPXXGXXPPPPPXGG 639
           PPP                  PP P  G  PPPPP  G
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPG 769


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 20/76 (26%), Positives = 22/76 (28%), Gaps = 3/76 (3%)
 Frame = -1

Query: 662 PPPPPXGGXXXPXXXPXXXXXXXGXXXGGXQXXXXPPPPRGXGXXXXX---KKXXXPPPP 492
           PPPPP          P       G           PPPPR           +    PPPP
Sbjct: 311 PPPPPPPSRRNRGKPPI------GNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPP 364

Query: 491 PXXXTSNRXXAPXPXS 444
           P     +    P P S
Sbjct: 365 PPRSAPSTGRQPPPLS 380


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 23.4 bits (48), Expect(2) = 6.4
 Identities = 11/34 (32%), Positives = 13/34 (38%)
 Frame = -1

Query: 557 PPPPRGXGXXXXXKKXXXPPPPPXXXTSNRXXAP 456
           PPPP   G     +    PPPPP      +   P
Sbjct: 10  PPPPPPPGFEPPSQ--PPPPPPPGYVKKRKNKTP 41



 Score = 21.4 bits (43), Expect(2) = 6.4
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = -1

Query: 680 PXXGXXPPPPPXG 642
           P     PPPPP G
Sbjct: 5   PPGNPPPPPPPPG 17



 Score = 21.0 bits (42), Expect(3) = 8.0
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = -3

Query: 558 PPPPPXXGGXXXXKKK 511
           PPPPP  G     K K
Sbjct: 24  PPPPPPPGYVKKRKNK 39



 Score = 20.6 bits (41), Expect(3) = 8.0
 Identities = 8/21 (38%), Positives = 8/21 (38%)
 Frame = -3

Query: 687 PPPXXXXXPPPPAXGRXXXPP 625
           PP      PPPP       PP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPP 25



 Score = 20.6 bits (41), Expect(3) = 8.0
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = -3

Query: 582 GGXPXKXXPPPPP 544
           G  P    PPPPP
Sbjct: 17  GFEPPSQPPPPPP 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,232,798
Number of Sequences: 5004
Number of extensions: 28350
Number of successful extensions: 87
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 719358436
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)