Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_O18
(1306 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomy... 144 2e-35
SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism... 138 1e-33
SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyc... 109 6e-25
SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde reduc... 99 1e-21
SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc... 97 5e-21
SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomy... 56 8e-09
SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase YakC|Schizo... 39 0.001
SPCC737.06c |||glutamate-cysteine ligase regulatory subunit |Sch... 36 0.012
SPCC965.06 |||potassium channel subunit |Schizosaccharomyces pom... 35 0.022
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 31 0.46
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual 31 0.46
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 28 2.5
SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|ch... 28 3.3
SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 4.3
SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|ch... 27 5.7
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 27 7.5
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ... 27 7.5
SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual 27 7.5
SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr 2|||... 26 10.0
SPBC4B4.10c |mug77|atg5|autophagy associated protein Atg5 |Schiz... 26 10.0
>SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 321
Score = 144 bits (349), Expect = 2e-35
Identities = 81/215 (37%), Positives = 118/215 (54%), Gaps = 1/215 (0%)
Frame = +2
Query: 356 LRDGTFMPVIALGTALLPPRLTTEIVETAIDMGYRAIDTAYIYGNEKLIGKAIKNKIDDG 535
L DG+ +P + LGT P T V+TA+ GYR ID A IYGNE +G IK + G
Sbjct: 18 LADGSKIPGLGLGTWRSEPNQTKNAVKTALQYGYRHIDAAAIYGNEDEVGDGIK---ESG 74
Query: 536 TVRRDELFIMGKLWSTFHRTDLVETACRISLADLGLEFFDLFLIHNPMSLKEGNSSIPKI 715
R+D +++ KLW H + V A +L DL L++ D +LIH P+S K G PK
Sbjct: 75 VPRKD-IWVTSKLWCNAHAPEAVPKALEKTLKDLKLDYLDEYLIHWPVSFKTGEDKFPKD 133
Query: 716 SSV-IQYSEFDYMDAWFGMEDLVAKGLAKSIGVSNFNSTQIQKILDKGKVKPAVNQVECH 892
+ Y + + W ME L+ G + IG+SNFN T +++IL KVKPAV+Q+E H
Sbjct: 134 KDGNLIYEKNPIEETWKAMEKLLETGKVRHIGLSNFNDTNLERILKVAKVKPAVHQMELH 193
Query: 893 PYLTQQRLHKFCEEKEIILSCFXVLGSKGTPTEYK 997
P+L Q + ++ I ++ + G++ T E K
Sbjct: 194 PFLPQTEFVEKHKKLGIHVTAYSPFGNQNTIYESK 228
>SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 138 bits (335), Expect = 1e-33
Identities = 77/212 (36%), Positives = 116/212 (54%), Gaps = 1/212 (0%)
Frame = +2
Query: 344 ATLKLRDGTFMPVIALGTALLPPRLTTEIVETAIDMGYRAIDTAYIYGNEKLIGKAIKNK 523
A L +G +P I LGT T V A+ GYR IDTA+IYGNEK IG+ I+
Sbjct: 13 AYFTLPNGDKIPSIGLGTWRSGKDETKNAVCAALKAGYRHIDTAHIYGNEKEIGEGIR-- 70
Query: 524 IDDGTVRRDELFIMGKLWSTFHRTDLVETACRISLADLGLEFFDLFLIHNPMSLKEGNSS 703
+ V R ++++ KLW HR LV A +L DL LE+ D +LIH P +L G
Sbjct: 71 --ESGVPRTDIWVTSKLWCNAHRAGLVPLALEKTLQDLNLEYIDAYLIHWPFALLSGPEE 128
Query: 704 IPKISS-VIQYSEFDYMDAWFGMEDLVAKGLAKSIGVSNFNSTQIQKILDKGKVKPAVNQ 880
+P+ + Y + + W ME+L+ G + IG+SNFN+ + ++L KVKP ++Q
Sbjct: 129 LPRNEKGELIYEDVPIEETWQAMEELLETGKVRYIGISNFNNEYLDRVLKIAKVKPTIHQ 188
Query: 881 VECHPYLTQQRLHKFCEEKEIILSCFXVLGSK 976
+E HPYL Q + ++ +I +S + L ++
Sbjct: 189 MELHPYLPQTEYLEKHKKLQIHVSAYSPLANQ 220
>SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 109 bits (263), Expect = 6e-25
Identities = 74/216 (34%), Positives = 111/216 (51%), Gaps = 3/216 (1%)
Frame = +2
Query: 329 SVKEVATLKLRDGTFMPVIALGTALLPPRLTTEIVETAIDMGYRAIDTAYIYGNEKLIGK 508
S E T+ L +G +P I G +L +V A+D GYR IDTA +YGNE + GK
Sbjct: 4 SQTESTTVTLTNGMVIPRIGFGAFMLKYNECYGLVTQALDSGYRHIDTAAVYGNEDICGK 63
Query: 509 AIKNKIDDGTVRRDELFIMGKL--WSTFHRTDLVETACRISLADLGLEFFDLFLIHNPMS 682
AI + + V+R ++F+ KL S ++ T A R SL LG + DLFLI +P
Sbjct: 64 AIVDWCEKNNVKRTDIFLTSKLANCSDYYST---RAAIRSSLHHLG-TYIDLFLIQSPAG 119
Query: 683 LKEGNSSIPKISSVIQYSEFDYMDAWFGMEDLVAKGLAKSIGVSNFNSTQIQKI-LDKGK 859
K+ +I+S W ME+ V G +S+GVSN+ +Q++ K
Sbjct: 120 GKKS-----RIAS------------WKAMEEFVDSGDIRSVGVSNYGVKHLQELYASNPK 162
Query: 860 VKPAVNQVECHPYLTQQRLHKFCEEKEIILSCFXVL 967
P VNQ+E HP+L+Q + K+C+ +I + + L
Sbjct: 163 FYPCVNQIELHPFLSQDDIVKYCQSHDIAIEAYSPL 198
>SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde
reductase AKR3C2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 284
Score = 99.1 bits (236), Expect = 1e-21
Identities = 69/206 (33%), Positives = 101/206 (49%), Gaps = 8/206 (3%)
Frame = +2
Query: 374 MPVIALGTALLPP------RLTTEIVETAIDMGYRAIDTAYIYGNEKLIGKAIKNKIDDG 535
+P +GTAL R + V+ A+ G+ ID A +YGNE+ +G A+K +
Sbjct: 12 VPAYGVGTALFKKEKGEINRTIVDSVKNALAAGFIHIDCAEVYGNEEEVGVALK----EA 67
Query: 536 TVRRDELFIMGKLWSTFHRTDLVETACRISLADLGLEFFDLFLIHNPMSLKEGNSSIPKI 715
V R +LFI K+ H D + A SL LG ++ DL+L+H+P IP
Sbjct: 68 NVPRSKLFITSKV---MHNVDNIPEALNESLRKLGTDYLDLYLLHSP---------IPFY 115
Query: 716 SSVIQYSEFDYMDAWFGMEDLVAKGLAKSIGVSNFNSTQIQKILDKGKVKPAVNQVECHP 895
I SE W ME + GL S+GVSNF ++++L + P VNQ+E HP
Sbjct: 116 EKKIPISE-----GWKAMETALGTGLVHSVGVSNFRIPDLEELLKTSTITPRVNQIEFHP 170
Query: 896 --YLTQQRLHKFCEEKEIILSCFXVL 967
Y + L +FC+ K II+ + L
Sbjct: 171 QVYKAAKPLVEFCQSKGIIVEGYGPL 196
>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 275
Score = 97.1 bits (231), Expect = 5e-21
Identities = 64/208 (30%), Positives = 110/208 (52%), Gaps = 2/208 (0%)
Frame = +2
Query: 350 LKLRDGTFMPVIALGTALLPPRLTTEIVETAIDMGYRAIDTAYIYGNEKLIGKAIKNKID 529
+KL +G P A G+ ++ + V A+ GYR ID+A +Y NE G+AI ++
Sbjct: 6 VKLNNGLKCPQFAYGSYMVNRTKCFDSVYAALQCGYRHIDSAQMYHNEADCGRAILKFME 65
Query: 530 DGTVRRDELFIMGKLWS-TFHRTDLVETACRISLADLGLEFFDLFLIHNPMSLKEGNSSI 706
+ +R++++ KL + +++ L ++ S+ GL + DLFL+H+P
Sbjct: 66 ETGTKREDIWFTSKLNDLSGYKSTL--SSIDASVKACGLGYIDLFLLHSPYG-------- 115
Query: 707 PKISSVIQYSEFDYMDAWFGMEDLVAKGLAKSIGVSNFNSTQIQKILDKG-KVKPAVNQV 883
D +++W +E V +G ++IGVSNF IQ++LD K+ P VNQ+
Sbjct: 116 ------------DRIESWKALEKGVEEGKLRAIGVSNFGPHHIQELLDSHPKIIPCVNQI 163
Query: 884 ECHPYLTQQRLHKFCEEKEIILSCFXVL 967
E HP+ +QQ++ +CE K I L+ + L
Sbjct: 164 ELHPFCSQQKVVDYCESKGIQLAAYAPL 191
>SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 276
Score = 56.4 bits (130), Expect = 8e-09
Identities = 46/182 (25%), Positives = 82/182 (45%), Gaps = 1/182 (0%)
Frame = +2
Query: 425 EIVETAIDMGYRAIDTAYIYGNEKLIGKAIKNKIDDGT-VRRDELFIMGKLWSTFHRTDL 601
+++E A+ +G R ID+A Y NEK +AI++ ++R+++ ++ K+ + +
Sbjct: 29 QVIE-ALSLGIRVIDSAITYRNEKECEQAIQDFCHQNVNIKREDITLITKIPDSLQGFER 87
Query: 602 VETACRISLADLGLEFFDLFLIHNPMSLKEGNSSIPKISSVIQYSEFDYMDAWFGMEDLV 781
A SL G D+ LIH+P + +I S W +
Sbjct: 88 TWKAVEQSLRRTGRPKLDVVLIHSP------KWPVRRIES------------WRALLQHQ 129
Query: 782 AKGLAKSIGVSNFNSTQIQKILDKGKVKPAVNQVECHPYLTQQRLHKFCEEKEIILSCFX 961
+G IGVSN+N +++I+ G PA+NQVE + + +C I++ F
Sbjct: 130 KEGRINKIGVSNYNIHHLEEIISLGLPLPAINQVEFSAFNNRPTFLSYCFNHGILVQAFS 189
Query: 962 VL 967
L
Sbjct: 190 PL 191
>SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase
YakC|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 39.1 bits (87), Expect = 0.001
Identities = 49/204 (24%), Positives = 85/204 (41%), Gaps = 13/204 (6%)
Frame = +2
Query: 428 IVETAIDMGYRAIDTAYIYG---NEKLIGKAIKNKIDDGTVRRDELFIMGKLW------- 577
++ A D+G D++ +YG NE+ IG+ K T RR E+F+ K
Sbjct: 38 VLTHAADLGCTFWDSSDMYGFGANEECIGRWFKQ-----TGRRKEIFLATKFGYEKNPET 92
Query: 578 ---STFHRTDLVETACRISLADLGLEFFDLFLIHNPMSLKEGNSSIPKISSVIQYSEFDY 748
S + D +E A +SL LG++ DL+ +H G + I KI ++
Sbjct: 93 GELSLNNEPDYIEKALDLSLKRLGIDCIDLYYVHR----FSGETPIEKIMGALKKCVEAG 148
Query: 749 MDAWFGMEDLVAKGLAKSIGVSNFNSTQIQKILDKGKVKPAVNQVECHPYLTQQRLHKFC 928
+ G+ + A + ++ V ++ Q++ P ++E P + + K C
Sbjct: 149 KIRYIGLSECSANTIRRAAAVYPVSAVQVE-------YSPFSLEIE-RPEI---GVMKAC 197
Query: 929 EEKEIILSCFXVLGSKGTPTEYKS 1000
E I + C+ LG YKS
Sbjct: 198 RENNITIVCYAPLGRGFLTGAYKS 221
Score = 29.1 bits (62), Expect = 1.4
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = -1
Query: 679 HRIVDEEEVEKLQAQVCQ*NPAGRLHQIGAMECTPQFTHNEKLVSPHGAVVNLVLDRFSY 500
HR E +EK+ + + AG++ IG EC+ V P A V + FS
Sbjct: 126 HRFSGETPIEKIMGALKKCVEAGKIRYIGLSECSANTIRRAAAVYPVSA-VQVEYSPFSL 184
Query: 499 EL 494
E+
Sbjct: 185 EI 186
>SPCC737.06c |||glutamate-cysteine ligase regulatory subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 287
Score = 35.9 bits (79), Expect = 0.012
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
Frame = +2
Query: 638 GLEFFDLFLIHNP--MSLKE-GNSSIPKISSVIQY---SEFD-YMDAWFGMEDLVAKGLA 796
G++F ++ P LKE GNSS +I I E ++D W +E+ V +G
Sbjct: 115 GIDFVSTLVVSFPHITFLKESGNSSSNEIYDSIDEIPPQEIQSWVDTWKLLEEKVGEGKI 174
Query: 797 KSIGVSNFNSTQIQKILDKGKVKPAVNQV 883
++GVS F ++Q+++ V P Q+
Sbjct: 175 GTLGVSEFGVNELQRLISSVNVVPESTQI 203
>SPCC965.06 |||potassium channel subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 344
Score = 35.1 bits (77), Expect = 0.022
Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 9/95 (9%)
Frame = +2
Query: 419 TTEIVETAIDMGYRAIDTAYIYGN---EKLIGKAIKN---KIDDGTVRRDELFIMG-KLW 577
T ++ A D+G DTA IY N E ++GKAIK + + F G KL
Sbjct: 46 TKNCLKQAWDLGINTFDTAEIYSNGNSETVMGKAIKELGWDRSEYVITTKVFFGAGTKLP 105
Query: 578 ST--FHRTDLVETACRISLADLGLEFFDLFLIHNP 676
+T R ++E SL LGL + D+ + H P
Sbjct: 106 NTTGLSRKHIIE-GLNASLKRLGLPYVDVIMAHRP 139
>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 773
Score = 30.7 bits (66), Expect = 0.46
Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 4/139 (2%)
Frame = +2
Query: 323 KGSVKEVATLKLRDGTFMPVIALGTALLPPRLTTEIVETAIDMGYRAIDTAYIYGNEKLI 502
K S+K++ G ++ G A++P L +++ A +G R + G +LI
Sbjct: 366 KSSLKKMNQNSQLTGYIAVLLKKGLAIVPYTLPIKML-LADAVGKRTSKIGKLRGTNELI 424
Query: 503 GKAIKNKIDDGTVRRDELFIMGKLWSTFHRTDLVETACRISLADL--GLEFFDLFL--IH 670
G+ + K +G RD+L +L R +L+ SLA+ +EF FL +
Sbjct: 425 GEGVLTKSKNGPSMRDQLLKNIQLQDHSLRDELISLR---SLAEQKNTIEFDAKFLGVVE 481
Query: 671 NPMSLKEGNSSIPKISSVI 727
+ N I K SSV+
Sbjct: 482 RYQNQYANNCKILKTSSVL 500
>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
Length = 815
Score = 30.7 bits (66), Expect = 0.46
Identities = 18/58 (31%), Positives = 34/58 (58%)
Frame = -2
Query: 318 LASFSSAILVLYCSSVRSPVSRFCLPLSKRRCPLPGDSILTEVIFLNTKKHNMNQIIF 145
++SFS+ + +LY + +S VS +PL + L G S+LT +I++ K+ Q ++
Sbjct: 49 ISSFSTHLNILYFNLSKSMVSFAQVPL-EEYLNLLGHSLLTSIIYVMLKRRFYEQSVY 105
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2386
Score = 28.3 bits (60), Expect = 2.5
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -2
Query: 375 MNVPSRSFKVAT-SFTLPFSLASFSSAILVLYCSSVRSPVSRFCL 244
MN+ F + T ++TLPF + + + A++V +S V+ CL
Sbjct: 726 MNISEGDFLIRTQAYTLPFLVLTKNKALIVRIAELSQSDVATLCL 770
>SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 27.9 bits (59), Expect = 3.3
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = -2
Query: 330 LPFSLASFSSAILVLYCSSVRSPVSRFCLPLSKRRCPLPGDSILTEVIFLNTKKHNMNQI 151
+P S S + L+ +V S + L + CP D L+ +I+L+ H+ +
Sbjct: 58 IPLSPTSLKNPCLIFSAKNVPSISIQAYLTRILKYCPATNDVFLSVLIYLDRIVHHFHFT 117
Query: 150 IFI 142
+FI
Sbjct: 118 VFI 120
>SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 255
Score = 27.5 bits (58), Expect = 4.3
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -2
Query: 369 VPSRSFKVATSFTLPFSLASFSSAILV 289
+PS+ F++ T F PF+ FS +++V
Sbjct: 177 LPSQRFEIVTGFLSPFNKLYFSKSLIV 203
>SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 548
Score = 27.1 bits (57), Expect = 5.7
Identities = 21/83 (25%), Positives = 40/83 (48%)
Frame = +2
Query: 638 GLEFFDLFLIHNPMSLKEGNSSIPKISSVIQYSEFDYMDAWFGMEDLVAKGLAKSIGVSN 817
G + F+L L +NP +++ SI + + Y + W+G + L + L S+ SN
Sbjct: 103 GAKLFEL-LNNNPGDIEKILGSIQGPFAFVYY-QVRTNTLWWGRDRLGRRSLLYSLRDSN 160
Query: 818 FNSTQIQKILDKGKVKPAVNQVE 886
F + + D +V+P + V+
Sbjct: 161 FVLSSVGNSSDFREVEPGFHSVQ 183
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 26.6 bits (56), Expect = 7.5
Identities = 15/52 (28%), Positives = 29/52 (55%)
Frame = +2
Query: 788 GLAKSIGVSNFNSTQIQKILDKGKVKPAVNQVECHPYLTQQRLHKFCEEKEI 943
GL +GV + Q +++L+ +P N V Y+TQ+ + + C++KE+
Sbjct: 206 GLWSELGVEPADVPQYEQLLESHTNRP--NDV----YVTQELIDQLCKQKEV 251
>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 26.6 bits (56), Expect = 7.5
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +2
Query: 677 MSLKEGNSSIPKISSVIQYSEFDYMDAWFGMEDLVAKGLAKSIGVSNFNST 829
+S N ++ +S + + DY WF E LV +G +I FNS+
Sbjct: 62 ISSNSHNVNLFHLSPEFKRFKEDYHSPWFRQETLVLEGHEHNIPCITFNSS 112
>SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 26.6 bits (56), Expect = 7.5
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -2
Query: 447 SIAVSTISVVNRGGSKAVPKAMTGMNVPSRSFKVA--TSFTLPFSLASFSS 301
SI STI+ GS+ +TG N P + +V T+ T +L S SS
Sbjct: 99 SIITSTITTTITSGSQLYTTTITGQNTPVDTVEVVIPTAGTFTTTLTSGSS 149
>SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 462
Score = 26.2 bits (55), Expect = 10.0
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = +1
Query: 736 GVRLHGRLVRHGRPRSERLGQ---EHRGQQLQFDPD 834
GV +HG L GR + LG+ E +QL+F PD
Sbjct: 101 GVCIHGELTDFGRVTTRTLGEYLRERYVKQLKFLPD 136
>SPBC4B4.10c |mug77|atg5|autophagy associated protein Atg5
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 261
Score = 26.2 bits (55), Expect = 10.0
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Frame = +1
Query: 1 QLSTPIGNSLXSHSPXRXREKTPSFRKSKI-------LDIFLIFVLEIFSKIKQNEDNLV 159
Q S P+G+SL R + PS K I + IFL VL+ ++ D +
Sbjct: 195 QTSAPLGSSLGEFLNKRLPDLFPSCDKFLIVKPVIHGITIFLQSVLDELNRDFCYIDGFL 254
Query: 160 HIVLLRV 180
HIVL++V
Sbjct: 255 HIVLMKV 261
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,552,808
Number of Sequences: 5004
Number of extensions: 93262
Number of successful extensions: 329
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 713396902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -