Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_O17
(1239 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces pom... 30 0.58
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe... 29 1.8
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 28 2.3
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met... 28 3.1
SPAC19D5.02c |||peroxisomal membrane protein Pex22 |Schizosaccha... 27 5.4
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 27 7.1
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb... 26 9.4
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo... 26 9.4
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 26 9.4
>SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 30.3 bits (65), Expect = 0.58
Identities = 18/69 (26%), Positives = 28/69 (40%)
Frame = +3
Query: 309 NMSVEASDSGKSDRKLYNSVITADYDDATKRCEQLQSEPDGSYIIKNTVTELLNNAESNT 488
+++V A DS S D+D K + + EP G + N L NA+ +T
Sbjct: 279 SVNVYAKDSNHSSASGNTKNKAKDWDSLAKLADLEEDEPTGEAALANLFQNLYKNADDDT 338
Query: 489 INFSYKLWT 515
K +T
Sbjct: 339 RRAMMKSYT 347
>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 564
Score = 28.7 bits (61), Expect = 1.8
Identities = 17/58 (29%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Frame = +3
Query: 699 KFMSS-WESNRVYFKIFNPKYNQRLKMGDPVKDDERKVFSSDDATDSTSQWYLQAMNH 869
KF+ + +E + FKI++ RL++ D RK+ S D+ + +++W+LQ ++H
Sbjct: 425 KFIENDFEKMKRLFKIYD-----RLRIQLKGIDQSRKLDFSPDSEEKSTKWFLQQIDH 477
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 28.3 bits (60), Expect = 2.3
Identities = 16/51 (31%), Positives = 29/51 (56%)
Frame = +3
Query: 621 MTLSKDLDQNGDRDAYGDEDDHKNSWKFMSSWESNRVYFKIFNPKYNQRLK 773
M LS D D GD +A+G +H W+ +S++ S + + ++P ++LK
Sbjct: 258 MCLSGDFDHYGDVEAFG---NHPPWWRQLSNFASVQDRLRDWDPIVAKKLK 305
>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
metabolism|Schizosaccharomyces pombe|chr 2|||Manual
Length = 811
Score = 27.9 bits (59), Expect = 3.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 552 LEFRLILDDKKDCKIINKHDDLYMTLSKDLDQNGD 656
LE+ L+L + K+IN HD ++ TL L D
Sbjct: 457 LEWVLLLQRRTGGKLINMHDPIFQTLLLQLSDPSD 491
>SPAC19D5.02c |||peroxisomal membrane protein Pex22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 223
Score = 27.1 bits (57), Expect = 5.4
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = -2
Query: 878 VAFVIHRLQVPLTCAV 831
+AFV H L++P++CAV
Sbjct: 11 LAFVAHALEIPISCAV 26
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 26.6 bits (56), Expect = 7.1
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +3
Query: 597 INKHDDLYMTLSKDLDQNGDRDAYGDEDDHKNSWKFMSSWESNRVYFKIFNPKYNQ 764
I++ DD Y + L++ D DAY + ++ +F+S ESN F YN+
Sbjct: 54 IHEQDDSYSDI---LEEEPDEDAYDSPERPSSTEEFISQDESNISAGSSFMFPYNR 106
>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 657
Score = 26.2 bits (55), Expect = 9.4
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 771 KMGDPVKDDERKVFSSDDATDSTSQWYLQAMNHKGDLL 884
++GD VK+ + + + + DSTS+W L N G +
Sbjct: 562 EIGDYVKELDEESKKAIENKDSTSEWLLHLYNFFGSAI 599
>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 26.2 bits (55), Expect = 9.4
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +3
Query: 396 KRCEQLQSEPDGSYIIKNTVTELLNNAESNTINFSYKLWTTGHQNIVQSCFPLEFRLILD 575
K E+L + + ++ N+V LN+ NF Y +W+ N QS L + L D
Sbjct: 803 KMNEELSTTDEAVKLLANSV---LNDVHPRVPNFRYFIWSVPMNNWFQSLVWL-YTLSFD 858
Query: 576 DK 581
+K
Sbjct: 859 EK 860
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 26.2 bits (55), Expect = 9.4
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 555 EFRLILDDKKDCKIINKHDDLYMTLSKDLDQNGDRDAYGDEDDHKNS 695
E + D++ D + + D+ + S D+ ++GD DEDD K+S
Sbjct: 345 EAEWVADEEDDGEDLESEDE-EVDNSDDIVEDGDNAFVDDEDDDKDS 390
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,131,528
Number of Sequences: 5004
Number of extensions: 81204
Number of successful extensions: 221
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 673357516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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