Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_O16
         (1295 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom...    43   1e-04
SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr 2||...    30   0.80 
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb...    27   7.5  
SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   7.5  
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual      26   9.9  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    26   9.9  

>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 41/157 (26%), Positives = 67/157 (42%), Gaps = 7/157 (4%)
 Frame = +2

Query: 119 ANSENITESYLGTIKIVKYXKPAKKNAIDVHMYVKVKEIFDSAAHDENISMIVLTGAGDY 298
           +N   + ES  G  +I    +P   NAI+V M   +     S        +I+L G G  
Sbjct: 54  SNDTVLYESKNGA-RIFTLNRPKVLNAINVDMIDSILPKLVSLEESNLAKVIILKGNGRS 112

Query: 299 YSSGNDF-TAALETPKYNISNI----LKEYITA--FIKFPKILIAVVNGPAIGIAATTLA 457
           +SSG D   AAL      +  +     +EY  +     + K ++A++NG  +G  +    
Sbjct: 113 FSSGGDIKAAALSIQDGKLPEVRHAFAQEYRLSHTLATYQKPVVALMNGITMGGGSGLAM 172

Query: 458 LCDLVFASENSYFYTPFTKLGIVAEGCSTFTFPRLIG 568
                 A E++ F  P T +G   +  ++F F RL G
Sbjct: 173 HVPFRIACEDTMFAMPETGIGYFTDVAASFFFSRLPG 209


>SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 525

 Score = 29.9 bits (64), Expect = 0.80
 Identities = 14/57 (24%), Positives = 30/57 (52%)
 Frame = +2

Query: 314 DFTAALETPKYNISNILKEYITAFIKFPKILIAVVNGPAIGIAATTLALCDLVFASE 484
           D  A +E+  +N+ + L + +  F+K+P +L  +    ++GI +  + L +    SE
Sbjct: 203 DSMAKIESNSWNLDSFLVKPVQRFLKYPLLLNQLYRSASLGIISDYVLLGEACHKSE 259


>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 424

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 12/48 (25%), Positives = 26/48 (54%)
 Frame = +2

Query: 551 FPRLIGERKAAEMLLYNHKMSAKEALHCGFINYIYKTEELQSKVWDKI 694
           F +LI +     +L Y  +   K+ L CGF + +   ++  +++W+K+
Sbjct: 281 FLQLIKDSSRRAVLAYKEREGIKKDL-CGFDSRLLFNQQQMNELWEKV 327


>SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 338

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 644 NYIYKTEELQSKVWDKIVEVSKTPQHSLTITKKL 745
           N+I + + L+  +  KIV   +   H +T+ KKL
Sbjct: 134 NFIAQKKALEMNIMPKIVNTLRQENHPVTLLKKL 167


>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +2

Query: 698 EVSKTPQHSLTITKKLLRNSYHNDLLSANAKEIEELNKIWNK 823
           EV   P     + K L+ N++      A+ KE+ EL K W K
Sbjct: 3   EVCAAPAPKKMVAKSLVLNTFRK----ASVKEVVELKKPWKK 40


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +2

Query: 641 INYIYKTEELQSKVWDKIVEVSKTPQHSLTITKKLLRNSYHNDLLSANAKEIE-ELNKI 814
           I  I K+++ +S   D+IV      Q      KKLL+++   DLL    K +E EL++I
Sbjct: 39  IPLISKSKDYESIKNDRIVTEVNYEQQLRNSEKKLLQSNERYDLLEDERKLLENELSQI 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,106,539
Number of Sequences: 5004
Number of extensions: 82188
Number of successful extensions: 223
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 707435368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)