Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_O15
         (1231 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy...    51   3e-07
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb...    43   1e-04
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    31   0.43 
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa...    27   5.3  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    27   5.3  
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p...    27   7.0  

>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 656

 Score = 51.2 bits (117), Expect = 3e-07
 Identities = 37/119 (31%), Positives = 59/119 (49%)
 Frame = +2

Query: 626 SNFDTMIHLLKGNIGTGILAMPDAFKNAGLIFGVFCTLIMGAMCTHCMHILVQCSHELCI 805
           SN   ++ LLK  +GTG+L +P AFK  GL+F     LI+G +   C  +L+Q       
Sbjct: 276 SNGKAVLLLLKSFVGTGVLFLPKAFKLGGLVFSSATLLIVGVLSHICFLLLIQ------T 329

Query: 806 RSEKPALSFSEVIEDSFLSGPIVFRPYAKKMRALVNIFLVITXLGFGXVYFXXXATNLQ 982
           R + P  SF ++       G  ++ P+   MR  +   +V++ +GF   Y    A+ LQ
Sbjct: 330 RMKVPG-SFGDI-------GGTLYGPH---MRFAILASIVVSQIGFSSAYISFVASTLQ 377


>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
 Frame = +2

Query: 632 FDTMIHLLKGNIGTGILAMPDAFKNAGLIFGVFCTLIMGAMCTHC-MHILVQCSHELCIR 808
           F ++I+L    +G GIL++P+AF   GL+FG   T++  A  +   ++ + QC+     R
Sbjct: 22  FSSVINLANTILGAGILSLPNAFTKTGLLFGCL-TIVFSAFASFLGLYFVSQCA----AR 76

Query: 809 SEKPALSFSEVIEDSFLSGPIVF 877
             +   SF+ V + +F S  +VF
Sbjct: 77  LPRGKASFAAVAKHTFPSLAVVF 99


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 30.7 bits (66), Expect = 0.43
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = -2

Query: 339 NY*SRD*EKYM*INAVLLRIRLAYIQYISPKNIGNTLLREHNINKSIFCWN*S*XYYY 166
           N  SR  E+++  N V +R   A + Y++P+N    L  +H +NK    W+    +YY
Sbjct: 822 NIGSRLDERFIDANGVAIRDFSAELTYLTPENSKGKLSIDHFLNKVQSRWHDEEHHYY 879


>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
           Brl2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 680

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = +2

Query: 770 HILVQCSHELCIRSEKPALSFSEVIEDSF 856
           H+L +CSHE+ + S++ + +F+ V E S+
Sbjct: 312 HLLSECSHEINVLSQQ-SKNFNGVFESSY 339


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 563 KDHHHLSLVRLIVFQLHFLDC 501
           +D+ H  LVR+ +F +H+L C
Sbjct: 471 EDNEHSGLVRICLFIVHYLSC 491


>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 607

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +2

Query: 428 LLHKNVKIKLKAMSDEKQPLLTGPNSPENVIEIQSTEPVINDDGPSTEKTKGDYCPA 598
           ++H N K   K ++  K  +    NS  NV+E         D+ P TE+   ++ PA
Sbjct: 274 IVHGNNKNARKNIATLKSKIRDIVNSDANVVEQSEKTTEDADEEPETEENLDEFKPA 330


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,205,663
Number of Sequences: 5004
Number of extensions: 80850
Number of successful extensions: 186
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 667380970
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)